RNA id: TU103900


Basic Information

Item Value
RNA id TU103900
length 6293
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G94259
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 83669522 ~ 83675928 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGTTTTTCAATCTACATACTTTATTCAAACATGGGAaatgaaacaaatcaaaacacatcaatatttctttttttaaaacaTAAGTCATTTTTTTCTTACCAAAATTCTATACAGTTACTATTGAAAGGTAAACTCACAGACAAACATGTGGAATGATATATGAAGGAGGGAAACAGTCTTATGTTCAAGTCCAGTCAGTAGTAAAGCACTGTAGTTTTATGCAAGTAACACTTTCTCAGCACAAGGGTTATCATTCTGATGATGGGGGACGGAACGGCTTTCCTCAATCAATGGCTGTTTAAGCTACATATGTTCAGCAGGAGAAATGCGTTTTCTCTTACATGTTAAATGACTTTGAATGAACAGACAGACCTCTGCCAGAGTAACGTTACACAGTATGGTTTAGTGGTTTCAGTATTCCAGGAACTTTCCCAAAATggtcaggttttccagaaatctgtGAATATTCCAACCGGGACATCTGGAAAAGGgtggaatttggggaaagttgcCAGAATTGTGCAAATGCTGGGGAAAATGGAAGGGCGCCGTTACAAAGTTATTATAGAGCTTGGCAGTAAAAACTGTTCTCATCAAATAGATAAGCAAAGCCCTGTACATAAAAGTCTGAGGTGAAACATGAAAGGTCAACATCAACAAGTCAACAGGTATGTTCTCTCAAAGAGAGAATTATAGGAGCCAGCTATACATCATTATAAAATCTATAATTTCAATTAATTTATCAATCATGTAAATGTTAATATTTGAAAATCTCAATAATTCTCTGACTAAAATAAACGGATGTATCATTTGTATCCATTGTATTGATCGGGTAAAAGCAGTGGTTGTAAATGCAGGTTGAATAACTTATAGAGGGTAGAACTATAGACGTACTGCTAGTATTAGTTGAATAAAATCACAATTTGAAGGGGTCTCTTTTGATGCAACAAATATTtttcttaaaaataaataaataccacaCAGAAAATGTAGAAATAATCATCATGTCTCCAGAGAGTCAACCTCTGGATGAGAGCGACAGTACTAGAGAATTGACCAGGTCAGCTAAGGTAATTGCACTTTTTCTGTCTTATCGTAAAGAGCATCTTGGGGACTGTGTGAGGGTGTCCTAAAATGTACACCGTACAGAGGACTGTGTGAGGGTGTCCTAAAATGTACACCGTACAGAGGACTGTGTGAGGGTGTCCTAAAATGTACACCGTACAGAGGACTGTGTGAGTTCACAGCtgtataatacaataataatatgtATTAATACATATTTGTGTGTGGTTCTGAGAAAGCATGAGGCCCTTTATAACCAAACATGATTCTcaaatacaaaaaaacatgtttcattgtcatacaccagataggtgaagtgaaatgtgttgttttacagggtcagccatagtagtacagtgcCCCTGGAgctaattagggttaagtgccttgctcaaggacacatacagatttttcaccttgtcggttCAGGTATtctaaccagcaacctttcagttgctggcccaacgctctagccGCTATGCTACCTGTCACCCAAAACTCTAATCCCAACTTCTATACAAATTAAGACACCAAATCCCAGAATACAATGGGGCTTTACATGACAGGAAATCAGATGTTGAAAGAACAATGCTGATTTTAGTTTTGTTTGTCGTCATTGTACAAGTGTCATGGTTGGACCTCTGTTGTTGTCGTGTGTATGTTTACACTAGTATCAAATACGCTGTTGATAAAAATGTGTGTTTGCTGGAATGGTTGTAAAAGGTCAGAGAGGACCCTGGCATTGCTGTTCTCCCACAGATACAAAAGCACTTACAACAGACTGTAAGCCCAGAACACAGTGTTGCCTTGAGGAAACCACAACACCCGTGTTCAGACTGCACTTCCCTACTCCAAACACTAGATGGTGACCCAGTCAGCTCCTCACCGCCAAACTGCTCTGCTGACAGTTCCAATTGTACACGTTCATGTTCTGTCACTGCTCAGCATTTAGATTTTAGTATTGTAATTAAGTCAAGAAATCATGTTCTTGCAATTCTGCGCAGATTGAATTTGACACTATATTAGACTCTTACCAAGTTACATTTGCCTGATATCATTGATGACAACATAAGGTTTTGGCTCTGTGAAACAAGTGTCTCTATTGTCAACATATGGCAACTTTACTGGAGAGAAGCATCAGACATTACTTTTGGAAAAATGAAATCGAAAAATGTATAAATGTGTCTAATCAAAGCCTCATTATGCCAGATGTGAGAAAGAACGATACATCAAGTTAAATCGAATAATGATTAGTCAAACAACAGGTGAGTTAGGGACTGATCATTGTAACTTAGAAAGGGAAGGTTGTCTGACTGTGCAATAGAGACTTTAGCTCGACTGAAAAACTTTATGTTGTGTTGcaggtgtttgtctctctctcacaccggAGTCTCAATAACTGACTGTACagcaggagtggcttccaccataatttgcaaataaattcattacaaatcctacaatgtgattttctggagaaaaaaaatctcattttgtctgtcatggttgaagtgtacctatgaagaaaattacaggcctctctcatatttttaagtgggagaacttgcacaattggtggctgactaaatacttttttgtaaaCCAGTAGAGTCCAGGTCAACCAGTAGAGACCAGGTCAACCAGTAGAGTTCAGGTCAACCAATAGAGGTCAGGTCAACCAATAGAGGCCAGGTCAACCAATAGAGGCCAGGTAAACCAGTCGAGGCCATGTCAACCAGTAGATTCCATGTCAACCAGTAGAGACAGGTCAACCAGTAGAGGCCAGGTCAACCAGTAGAGGCCATGTCAACCAATAGAGGCCATGTCAACCAATAGAGACCATGTTTTTGAAAGCTGTATCCTCTGAAGATAGAGAGGGTCAGTTCATGGCTTGAGGTGAGGGAGCTGGTCAGGGGATGGTGGATGATGGTGATTGGTTGTCTCATAATAATAGGCCCTATACTCCATGCCTTCTGCCTCTGGACCTCTCATTGGAGGAAATAAACAGCCAATGATCAAATTAATATAATCTTATGTAAATGAGGATTTTAATAATTCCATCTGCATTTTCCATCTACATTATCATTATCAGTGTGATCAGAGAACTCAATTGACCCACTATAAACTGCcttgggaagagaggagaggaggatgacagGATGAGATAACAGTCTAAATATAGCAAGCTGTAGCTTCCTCAAGGCATCATAAAACCCATGATTACACCAACATAATTAACAACAGATTATTATTAAAAACTGCACATGGAATACCAGAAGTACTGTATAATTCACACAATAGAAAAAACATGACTGATTGGTTGGTTTTCCAAAGGTCATGTTAAGATGATGACTGACATGGGAGATTATCTAGCAATTTCCTGTGACTGAATGGTTGGTAGAAAATGGTTTTAAAAACGTTACATTCTTCTCAGAGCCTTTAAAGAGTTCCAATGGTAGAAGGAGGTAATGTCAGGTGGATGGCTGGATCTGATGTTATCCCAACGTTGTGTTTTGGTTGTATCAACGCTGTATCAATATTGTACCAACCCAACCCAAACAAGATGTAAAAACCCCAGAGCTTGAATAACCAGTAGGCCATATATAGCAATGACTTTCAGTGTTTGTTTTTCTAGATGAAAAGGGAAATGATCATTTTGGCAAAATTCCATTCCCCCCATCATTCATTGCTTTTCTCGATTCCTTTTTTGTCATCCAAGGGAGGgcaggtgtgtatgtgtctgtgtgttggacaGAAATATCAAATGTAAAACAAAAGATTTTTCCATAAATCttcctgtttttgtttctgtatAATTTCCCACATttatactgcaaaaaaaaatgtgtccttAGGACTTCCCGGGAACATCACGACATGGTCGTCAAGACATTGCGTCATGGTCCTGTGGAGGTTTTGTTTAGTTCCCGGTTGCCAGAACCAAACAGGAACCTGTTCATAAAGTTCCCTAGTGGACATAAAAAAAAACGTACTATAACGTTACACTGCGACCAAACCGGGACCTGCACTGATGTCCCCTTATGGATAACGTCTTGCTGAAACCCTAAAAATAACCTAATGGGAACATCGCTTAATGTCCTAGAGATGTCCTCTGTTTGCTGGGATATACTATAAAGAACTTGACTCATATTAAAAGAGAAAAGGGTTGAGAGGGATGTTGGTGGGAACTAAAAAGTGCTTCAATGCATGGTCAGATCCGATACAATCCAGTACGATCCGGTCTGATCTGGCCCAGACTAGTACAGACCCAAACCCAGAGGGGCGGGCATGTAGACCTTAGCGGGCTCTCTGCTGTCAGCGGTATGGTGGCAGTAGTTGGAATGTTCAATGTTCCAAAATGTTCCAAAGTGTTCTAGAATGTTCCAGAGATCCGGCGGCGCTTTAGCCCACGACTCACAGGAAGTACAACCAATAAACCAAACATACAAGCTAACAAACAAACAACGAAACAGAAACACTGAAACCTCTGAAGCAGAGTAAGTTCAtctgactctctgtgtgtgtgtggtgagagagagagagagagagagagagagagagagagagagagagcgagagagagaggtgtctatGGGCTCATCGGGCCCCATTGGAGAAAGTCCTGGGAAAAAGAAGGAGGGTTGTTGGTCCATAGTCCTGTCTTAGACGGTGTGGAGACGGTGGGGTCAGGGTGGGATGGTCACACCTCAGGAGAACATCCATACTATAGTCTTTTGTATAtctgcgtgtatgtgtgtatcacTCTGTGCGctgatcagtggaggctgctgaggggaggacggctcataataatggctggaacggagtgaatggaatggcatcaaaccatgtgtttgataccattcaaatgattccactccagccattaccacgagcctgtcctccccaattaaggtgccaccatccTCCTGTGgcgttcatgtgtgtgtttatatacgtTGGTCAGACATGATGTGTCCCTTTTCATGTGTATACGTAGGTCAGAGAtggtgtgtccctgtgtgtcagtattcatacctcttggcttattccacattttgttacagcctgaattcataatgcattaaatatgttttttctcacccatctacacacaataccccataatgacaaagcaaaaacatgaaATATAGAAATCtctcatttacataactattcacacccctgagtcaatactttgtagaagcacctttggcagtgattacagctgtgagtcttctatgtaagcctctaagagctttccacacctggattgtgcaacatttgcccatttctatttaaaaaatgtatcaagctctgtcaaattggttgttgatcattgctagacaaccatttcaggtcttgccatagattttaaagtGGATATAAGtcagaactgtaactcagccactcaggaacattcactgttatcttggtaagcaactccagtgtaggtttggccttgtgttttaggttatagtcctgctgaaaggtgaattaatctcccagtgtctggtggaaagcagactatcccaggtttttctctaggattttgcctgtgtttatcTCCATTCCATTGTATTTTATCCTGTAAAACTCCCCATCCTTAATGATATcaagaatacccataacatgatgcagccaccactatgcttgaaaatatgaagagtggtactcagtaatgtgttgtattggatttgccccaaacataacattttgtattcaggacaaaaagtgaattgctttgccacattttctgcaatattactttagttagtaccttgttgcaaacagcatgttatggaatattttttatactgtacaggcttctttctttttGCTCTGTCAATCAGgtaagtattgtggagtaactacaatgttgttgatccatcctcagttttctccagtcatagccattaaactctgtaacttttttaaagtcaccattggcctcatggtgaaatctctgagcggtttccttcctctcaggcaACTGAGTTAAAAAGGACGTCTTtaactttgtagtgactgggtgtattgatacaccataaaaagtgtaattcataacttcaccatgctcaaagggatatttaatgtctgctttgatttttaaaaaatgaccAATTGGTGAACTTCTTTATGAGGCAaaatggttgaatctgtgtttgaaatgcactgctagacagagaccttacagataattgcatgtgttgggtacagagatgtGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU103957 lncRNA downstream 2604 83666572 ~ 83666918 (-) True G94314
TU103956 lncRNA downstream 3640 83665655 ~ 83665882 (-) True G94313
TU103955 lncRNA downstream 3928 83665080 ~ 83665594 (-) True G94312
TU103954 lncRNA downstream 5298 83663356 ~ 83664224 (-) True G94311
TU103953 lncRNA downstream 6351 83662849 ~ 83663171 (-) True G94310
TU103959 lncRNA upstream 10977 83686905 ~ 83687211 (-) True G94316
TU103894 lncRNA upstream 44000 83719928 ~ 83721471 (-) True LOC110530770
TU103989 lncRNA upstream 47980 83723908 ~ 83725485 (-) True G94333
TU103990 lncRNA upstream 50801 83726729 ~ 83727048 (-) True G94334
TU103992 lncRNA upstream 55899 83731827 ~ 83732179 (-) True G94336
XM_036987024.1 mRNA downstream 260222 83388438 ~ 83409300 (-) False LOC110530724
XM_021613980.2 mRNA downstream 260223 83386997 ~ 83409299 (-) False LOC110530724
XM_021613988.2 mRNA downstream 260437 83386997 ~ 83409085 (-) False LOC110530724
XM_036986964.1 mRNA downstream 294899 83272529 ~ 83374623 (-) False LOC110530648
XM_036987115.1 mRNA upstream 136 83676064 ~ 83701456 (-) True LOC110532793
XM_036987195.1 mRNA upstream 37424 83713352 ~ 83718497 (-) False LOC110530770
XM_021614089.2 mRNA upstream 37424 83713352 ~ 83720755 (-) False LOC110530770
XM_036987207.1 mRNA upstream 37424 83713352 ~ 83720755 (-) False LOC110530770
XM_036987214.1 mRNA upstream 37424 83713352 ~ 83720755 (-) False LOC110530770
TU103830 other downstream 183585 83484056 ~ 83485937 (-) True G94201
TU103453 other downstream 708200 82949614 ~ 82961322 (-) False LOC100301648
TU103475 other downstream 708200 82949614 ~ 82961322 (-) False LOC100301648
TU103482 other downstream 708200 82949614 ~ 82961322 (-) True LOC100301648
TU102047 other downstream 1367675 82295312 ~ 82301847 (-) True LOC110532782
TU104323 other upstream 125404 83801332 ~ 83802471 (-) True G94613
TU104308 other upstream 482895 84158823 ~ 84160764 (-) False LOC110531033
TU104309 other upstream 482895 84158823 ~ 84160764 (-) True LOC110531033
TU104557 other upstream 527559 84203487 ~ 84204464 (-) True G94821
TU104675 other upstream 615832 84291760 ~ 84292623 (-) False LOC110532813

Expression Profile