RNA id: TU103997


Basic Information

Item Value
RNA id TU103997
length 388
lncRNA type intronic
GC content 0.55
exon number 1
gene id G94341
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 83740212 ~ 83740599 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCCCCCTCTAGCCTCCAGAGTCCCAGTCCTGCTCCACTGCCCCCTCTAGCCTCCAGAGTCCCAGTCCTGCTCCACTGCCTCCTCTAGCCTCCAGAGTCCCAGTCCTGCTCCCTCTAGCCTCCAGAGTCCCAGTCCTGCTCCCTCTAGCCTCCAGAGGCCCAGTCCTGTTCCCTCTAGCCTCCAGAGGCCCAGTCCTGCTCCCTCTAGCCTCCAGAGGCCCAGTCCTGCTCCCTCTAGCCTCCAGAGGCCCAGTCCTGTCCACTGACTCCCAGGGATAAATGGAGATAAtgggaaatatacagtaccagtcaaaagtttggacacacctactcattcaagggtttttctttattttttacattgtagaataatagtgaagacatcaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU103993 lncRNA downstream 7383 83732614 ~ 83732829 (-) True G94337
TU103992 lncRNA downstream 8033 83731827 ~ 83732179 (-) True G94336
TU103990 lncRNA downstream 13164 83726729 ~ 83727048 (-) True G94334
TU103989 lncRNA downstream 14727 83723908 ~ 83725485 (-) True G94333
TU103894 lncRNA downstream 18741 83719928 ~ 83721471 (-) True LOC110530770
TU103998 lncRNA upstream 203 83740802 ~ 83741225 (-) True G94342
TU104009 lncRNA upstream 14696 83755295 ~ 83755559 (-) True G94351
TU104010 lncRNA upstream 15140 83755739 ~ 83755963 (-) True G94352
TU104013 lncRNA upstream 18171 83758770 ~ 83760008 (-) True G94355
TU104030 lncRNA upstream 37932 83778531 ~ 83780840 (-) False G94365
XM_036987189.1 mRNA downstream 18298 83713352 ~ 83721914 (-) False LOC110530770
XM_021614037.2 mRNA downstream 18698 83713352 ~ 83721514 (-) False LOC110530770
XM_021614159.2 mRNA upstream 86350 83826949 ~ 83841893 (-) False LOC110530866
XM_021614203.2 mRNA upstream 210458 83951057 ~ 83956958 (-) True si:ch211-198a12.6
LOC110532804 mRNA upstream 225566 83966165 ~ 83967505 (-) True LOC110532804
XM_021614226.2 mRNA upstream 290955 84031554 ~ 84048130 (-) False LOC110530927
XR_002474617.2 mRNA upstream 357028 84097627 ~ 84110671 (-) False LOC110530947
TU103830 other downstream 254275 83484056 ~ 83485937 (-) True G94201
TU103453 other downstream 778890 82949614 ~ 82961322 (-) False LOC100301648
TU103475 other downstream 778890 82949614 ~ 82961322 (-) False LOC100301648
TU103482 other downstream 778890 82949614 ~ 82961322 (-) True LOC100301648
TU102047 other downstream 1438365 82295312 ~ 82301847 (-) True LOC110532782
TU104323 other upstream 60733 83801332 ~ 83802471 (-) True G94613
TU104308 other upstream 418224 84158823 ~ 84160764 (-) False LOC110531033
TU104309 other upstream 418224 84158823 ~ 84160764 (-) True LOC110531033
TU104557 other upstream 462888 84203487 ~ 84204464 (-) True G94821
TU104675 other upstream 551161 84291760 ~ 84292623 (-) False LOC110532813

Expression Profile