RNA id: TU103006



Basic Information


Item Value
RNA id TU103006
length 206
lncRNA type intronic
GC content 0.47
exon number 2
gene id G93524
representative True

Chromosome Information


Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 83775980 ~ 83776406 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CAAAGTttttccctcaccttctctctgttctcccctcaccttctctcaatgatcctccctcaccttctctcaatgttCCTCCCTCAACATTCTCTAAATGtttcctccctcaccttctctctgttcctctttcaccttctctcaatgttttacctccctcaccttctctcaatgttcctccctcacattctctctctgttcctccc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU103005 lncRNA upstream 930 83774552 ~ 83775050 (+) True G93523
TU103004 lncRNA upstream 3059 83772374 ~ 83772921 (+) True G93522
TU103000 lncRNA upstream 10849 83764216 ~ 83765131 (+) True G93519
TU102989 lncRNA upstream 31757 83743738 ~ 83744223 (+) True G93513
TU102988 lncRNA upstream 32565 83743183 ~ 83743415 (+) True G93512
TU103007 lncRNA downstream 141 83776547 ~ 83776901 (+) True G93525
TU104053 lncRNA downstream 25212 83801618 ~ 83802349 (+) True G94379
TU104081 lncRNA downstream 96102 83872508 ~ 83935450 (+) True G94401
TU104123 lncRNA downstream 172299 83948705 ~ 83948936 (+) True G94440
TU104132 lncRNA downstream 190145 83966551 ~ 83966754 (+) True G94449
XM_036987107.1 mRNA upstream 108309 83511117 ~ 83667671 (+) False LOC110530763
XM_036987108.1 mRNA upstream 108309 83511117 ~ 83667671 (+) False LOC110530763
XM_036987085.1 mRNA upstream 135737 83511117 ~ 83640243 (+) False LOC110530763
XM_036987094.1 mRNA upstream 135737 83511117 ~ 83640243 (+) False LOC110530763
XM_036987101.1 mRNA upstream 135737 83602827 ~ 83640243 (+) False LOC110530763
XM_021614140.2 mRNA downstream 22025 83798431 ~ 83817516 (+) False LOC110530850
XM_021614147.2 mRNA downstream 22130 83798536 ~ 83817516 (+) True LOC110530850
XM_021614180.2 mRNA downstream 64350 83840756 ~ 83851899 (+) True zgc:110319
XM_036987272.1 mRNA downstream 76160 83852566 ~ 83889994 (+) False LOC110530876
XM_036987259.1 mRNA downstream 76189 83852595 ~ 83889994 (+) False LOC110530876
TU102887 other upstream 226390 83511146 ~ 83549590 (+) True LOC110530763
TU102814 other upstream 302756 83472433 ~ 83473224 (+) True LOC110530741
TU102821 other upstream 442404 83333266 ~ 83333576 (+) True G93362
TU102659 other upstream 686048 83088531 ~ 83089932 (+) True G93204
TU101989 other upstream 1594184 82180946 ~ 82181796 (+) True G92575
TU104152 other downstream 268905 84045311 ~ 84048149 (+) True G94463
TU104770 other downstream 606351 84382757 ~ 84410052 (+) False LOC110532822
TU105595 other downstream 1363734 85140140 ~ 85141006 (+) True G95702
TU105730 other downstream 1458415 85234821 ~ 85235394 (+) True G95821
TU106091 other downstream 1861341 85637747 ~ 85638055 (+) True G96133

Expression Profile