RNA id: TU104030


Basic Information

Item Value
RNA id TU104030
length 2310
lncRNA type antisense_over
GC content 0.53
exon number 1
gene id G94365
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 83778531 ~ 83780961 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCAGATAGTTTCTTGGAGGGGGTGTTAAGCAGATTCTTAGTGGGCGTGTCCAGGAACCTGAGGGGCGATTCCAGGAAGCTGTTCACGTTGTGTTTGGTGGGTGTCGACTCCTCCGATAGATCCAAATCGCCATTAGCTGACGTGGACAAGACGGTGACCGGACCGGACCTCTCCACTTTGTAATACCCCTGCTGTTGACCCACAGAGGAGTAGCCATTGGATAAACCATGGTTCAACCCGGTTCTGTGGTTGTTAGAGTCTATGCTGGTGAAACTGGGGATAGTGGAGCTAGCCTTTAGGTTAGCACCGTGCTGCTGCCCAACGTAGGGCTGCGATACCTGAGAATACAATCCTCTTTCACAATCATGTCCttgtccaactccttgtccttgTAAAGGGTCCAGGTGACCGTTGAAATGCGACCACTGTTGGTTGTCATGACCATAACCTTGACTTCGACCACGATCGACGGCTCCAGAGGTTTTGTGGTATTTGACCCCACTGTGGGCGTTACTGTAGTAAAAGAGCTGCCGTCGTTCCTCCTGAGCCTCAGTCAGGTACCTCTTCAGATCCATCTGGGCCTGAGGCAGGAACAGGCTCCTCTTGTGGCTGAGCGATGATGTCTTCGGCTGGGGCAGAACCTTCTGGACCCTGGCTCTGTGGGGGGTCTTGCCGTTGGGTATTCGTTTGTACAGGGGGGTACGGTTGTTGGGTTTGCAGCCCTCCTCTTCCAGCCCCTCCGTTCCCTTCTTCTTCCTAGGTTTAGAAAGTGTGGTCCTGGGTTTCTTCACAGGGGTCTTCTTGTGGTTGGGTGGTGCTTGTTCAGAGTTGTAGTTGTACTTGATGGCTGAGACTGGAGTTCCTCTGGGAGGGTTGTTCTCTGAGTGCTGGGAGGGGTGGAAACCCTGCTGCTTGTGACGTGATTGGATGATGAACGCCAACTCGGCAAGTTGAGCCGCCACCTCTTCCTCATCCCTGTTCCTCCCGCTCTTACCCATCGTCCTCTCTATTGTTTCCTTGCTgttcctctccatgtctttccGCTGTCTGAAAGTGCCTTCGCCCCTGTTATGTTGAGAACCAAGGCCTTGGTCTGCTCTCCTGTACAGGTGTTGTCCTGCTCTCTCGGTGCTGTCGTAGGGAAGTCTGTCACAGTCCGAGCTGGCTTCTAGCAGGTCCTGTAGGGACAGGTTGCCAGTGGCTGCGGGGCTACGGGAATGACACTGGATGACATGAGCTTGTCTGGCCACTGGGGAGCGTATGACTGAGGTCTGGTGCAGAGGGGAGCGTATGACTGAGGTCTGGTGCAGAGGGGAGCTGATCACTAGAACTTTGTTGGAGCCCTGGAGAGGGGTGTTTCTATTGGATAAGTGCATGGAAGATGTTGTGGGGTTTTCACCCTGTGCGTTGGTTCTAAAGGGTTCTGGTGAGTTTTGTGGGATAGCTGCCAGTAAGGTTAGCGCCTCGATAGCGATAGCCTGGTCATTGCTAATATTCCTCTCTTCTACCAAAGACTGGATGCTTGGCTGAGAGAGATCTGGAGAGGGTTGCTCTCGTTTGACAATAATGTCGAGAGCTTTTCGTGGACTGATGGGAGCACTTTTCAAGCAAATATCCACCTTAAAGTCCTCCGGCTCTGTTTTGAACGAGCGTAGCACCGGGGAACGGGAGCTACACAACTTCTCCTCCAGACCCTTCCTGTCTGTGATAGAGAAACACACCACGGCTGCTAGCGTGGACAGAGCGTCCTCATAGACATCGTCATCATCGCCCCCTAGTGGGGCGGAGGACTGGTCCATGGACCACACCCACGGTTCCTCCACCTTTATCTTTTTCAGAGGAACAGCTATGCTGTCGTCCAGAAGTGCATCCTTCAGCTCAGAGCTGCCTTTGGGGTACGTAGATTTTGTAGTACTTTGGGACTCTAATTGTATTGTGGTATTTTGGGACTCAGGTGACAACTGATGTGATTCCGGACCAGCAATCAGTTGAGCACCGTTGGTTTTAGCCATGTTTTCGTTAGCACCGTTGGTTTTAGCCATGTTTTCGTTAGCACCGTTGTGAAAAGTCCCAGAAGAAGAGCAGTGGTGCTGTAGAAGAAGTCCATCATTGGTGTCCTCCAGGCCAGGCTCTCTCTTGATAAGTGCTGCTGGTCGTCCATCTCGGATTGGGGCAAGAGTGTGGACGTGGGGAGGGTgtgtgaagtggtgtgtgtgaggTATGTGACCCTCTTCGTCGTCCTCCGCTGCCGTATAGGTGTCCTCTGCCATCTGGACAGGGCCTCTTCCATTAACTGAGCTGTCCTCTGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104013 lncRNA downstream 18523 83758770 ~ 83760008 (-) True G94355
TU104010 lncRNA downstream 22568 83755739 ~ 83755963 (-) True G94352
TU104009 lncRNA downstream 22972 83755295 ~ 83755559 (-) True G94351
TU103998 lncRNA downstream 37306 83740802 ~ 83741225 (-) True G94342
TU103997 lncRNA downstream 37932 83740212 ~ 83740599 (-) True G94341
TU104038 lncRNA upstream 2264 83783104 ~ 83783392 (-) True G94367
TU104039 lncRNA upstream 3253 83784093 ~ 83784416 (-) True G94368
TU104040 lncRNA upstream 4528 83785368 ~ 83785715 (-) True G94369
TU104041 lncRNA upstream 5333 83786173 ~ 83786397 (-) True G94370
TU104043 lncRNA upstream 10467 83791307 ~ 83791566 (-) True G94372
XM_036987189.1 mRNA downstream 56617 83713352 ~ 83721914 (-) False LOC110530770
XM_021614037.2 mRNA downstream 57017 83713352 ~ 83721514 (-) False LOC110530770
XM_021614159.2 mRNA upstream 46109 83826949 ~ 83841893 (-) False LOC110530866
XM_021614203.2 mRNA upstream 170217 83951057 ~ 83956958 (-) True si:ch211-198a12.6
LOC110532804 mRNA upstream 185325 83966165 ~ 83967505 (-) True LOC110532804
XM_021614226.2 mRNA upstream 250714 84031554 ~ 84048130 (-) False LOC110530927
XR_002474617.2 mRNA upstream 316787 84097627 ~ 84110671 (-) False LOC110530947
TU103830 other downstream 292594 83484056 ~ 83485937 (-) True G94201
TU103453 other downstream 817209 82949614 ~ 82961322 (-) False LOC100301648
TU103475 other downstream 817209 82949614 ~ 82961322 (-) False LOC100301648
TU103482 other downstream 817209 82949614 ~ 82961322 (-) True LOC100301648
TU102047 other downstream 1476684 82295312 ~ 82301847 (-) True LOC110532782
TU104323 other upstream 20492 83801332 ~ 83802471 (-) True G94613
TU104308 other upstream 377983 84158823 ~ 84160764 (-) False LOC110531033
TU104309 other upstream 377983 84158823 ~ 84160764 (-) True LOC110531033
TU104557 other upstream 422647 84203487 ~ 84204464 (-) True G94821
TU104675 other upstream 510920 84291760 ~ 84292623 (-) False LOC110532813

Expression Profile