RNA id: TU104038



Basic Information


Item Value
RNA id TU104038
length 289
lncRNA type intronic
GC content 0.49
exon number 1
gene id G94367
representative True

Chromosome Information


Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 83783104 ~ 83783392 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gggtcataggcagcattcctcctcctccaaacacggcgagttgagttgatgccaaagagctccattttggtctcatctgaccacaacactttcacccagttgtcctctgaatcattcagatgttcattggcaaacttcagacgggcatgtgctttcttgagcagggggaccttacgggcgctgcaggatttcagtccttcatggCGTAGTGttttaccaattgttttcttggtgactatggtcccagctgccttgagatcattgacaagatcatcccgtgtagttctgg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU104031 lncRNA downstream 2143 83778552 ~ 83780961 (-) False G94365
TU104030 lncRNA downstream 2264 83778531 ~ 83780840 (-) False G94365
TU104026 lncRNA downstream 2264 83779393 ~ 83780840 (-) True G94365
TU104025 lncRNA downstream 2467 83779393 ~ 83780637 (-) False G94365
TU104013 lncRNA downstream 23096 83758770 ~ 83760008 (-) True G94355
TU104039 lncRNA upstream 701 83784093 ~ 83784416 (-) True G94368
TU104040 lncRNA upstream 1976 83785368 ~ 83785715 (-) True G94369
TU104041 lncRNA upstream 2781 83786173 ~ 83786397 (-) True G94370
TU104043 lncRNA upstream 7915 83791307 ~ 83791566 (-) True G94372
TU104048 lncRNA upstream 11258 83794650 ~ 83798011 (-) True G94374
XM_036987189.1 mRNA downstream 61190 83713352 ~ 83721914 (-) False LOC110530770
XM_021614037.2 mRNA downstream 61590 83713352 ~ 83721514 (-) False LOC110530770
XM_021614159.2 mRNA upstream 43557 83826949 ~ 83841893 (-) False LOC110530866
XM_021614203.2 mRNA upstream 167665 83951057 ~ 83956958 (-) True si:ch211-198a12.6
LOC110532804 mRNA upstream 182773 83966165 ~ 83967505 (-) True LOC110532804
XM_021614226.2 mRNA upstream 248162 84031554 ~ 84048130 (-) False LOC110530927
XR_002474617.2 mRNA upstream 314235 84097627 ~ 84110671 (-) False LOC110530947
TU103830 other downstream 297167 83484056 ~ 83485937 (-) True G94201
TU103453 other downstream 821782 82949614 ~ 82961322 (-) False LOC100301648
TU103475 other downstream 821782 82949614 ~ 82961322 (-) False LOC100301648
TU103482 other downstream 821782 82949614 ~ 82961322 (-) True LOC100301648
TU102047 other downstream 1481257 82295312 ~ 82301847 (-) True LOC110532782
TU104323 other upstream 17940 83801332 ~ 83802471 (-) True G94613
TU104308 other upstream 375431 84158823 ~ 84160764 (-) False LOC110531033
TU104309 other upstream 375431 84158823 ~ 84160764 (-) True LOC110531033
TU104557 other upstream 420095 84203487 ~ 84204464 (-) True G94821
TU104675 other upstream 508368 84291760 ~ 84292623 (-) False LOC110532813

Expression Profile