RNA id: TU104323


Basic Information

Item Value
RNA id TU104323
length 638
RNA type TUCP
GC content 0.41
exon number 2
gene id G94613
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 83801332 ~ 83802471 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CtcatgtgtgtatacacacacacactcatgtgtgtatacacacacacactcatgtgtgtatacacacacacactcatgtgtgtatacacacacacactcatgtgtgtatacacacacacactcatgtgtgtatacacacacacactcatgtgtgtatacacacacacactcatgtgtgtatacacacacacactcatgtgtgtatacacacacacacactcatgtgtgtatacacacacacacactcatgtgtgtatacacacacacacactcatgtgtgtatacacacacacacactcatgtgtgtatacacacacacacactcatgtgtatatacacacacacacacactcatgtatatacacacacacacacacacgtgtatatatacacacacacacacacacacacacacgtgtatatatatacacacacacgtgtatatataaacacacacacgtgtatatataaacacacaaacacccatATAAAACACTGTGAACATAGGTGGCCCTAAATAATGCTTAGGCGGCCTGACCAAGGATGTCAATGGCAGAAAAATCCCTGCGAATAGAATCTGAAATCCACTGGTCTAGGATCAAGTTTTTCAAACAGGAAAAAGACCAGAACTATGGAGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104048 lncRNA downstream 3321 83794650 ~ 83798011 (-) True G94374
TU104043 lncRNA downstream 9766 83791307 ~ 83791566 (-) True G94372
TU104041 lncRNA downstream 14935 83786173 ~ 83786397 (-) True G94370
TU104040 lncRNA downstream 15617 83785368 ~ 83785715 (-) True G94369
TU104039 lncRNA downstream 16916 83784093 ~ 83784416 (-) True G94368
TU104315 lncRNA upstream 11691 83814162 ~ 83817510 (-) False LOC110530866
TU104314 lncRNA upstream 38126 83840597 ~ 83851846 (-) True LOC110530866
TU104376 lncRNA upstream 82631 83885102 ~ 83885935 (-) True G94656
TU104375 lncRNA upstream 85626 83888097 ~ 83889981 (-) True G94655
TU104341 lncRNA upstream 146431 83948902 ~ 83950168 (-) True G94630
XM_036987189.1 mRNA downstream 79418 83713352 ~ 83721914 (-) False LOC110530770
XM_021614037.2 mRNA downstream 79818 83713352 ~ 83721514 (-) False LOC110530770
XM_021614043.2 mRNA downstream 79818 83713352 ~ 83721514 (-) False LOC110530770
XM_021614050.2 mRNA downstream 79818 83713352 ~ 83721514 (-) False LOC110530770
XM_036987183.1 mRNA downstream 79818 83713352 ~ 83721514 (-) False LOC110530770
XM_021614159.2 mRNA upstream 24478 83826949 ~ 83841893 (-) False LOC110530866
XM_021614203.2 mRNA upstream 148586 83951057 ~ 83956958 (-) True si:ch211-198a12.6
LOC110532804 mRNA upstream 163694 83966165 ~ 83967505 (-) True LOC110532804
XM_021614226.2 mRNA upstream 229083 84031554 ~ 84048130 (-) False LOC110530927
XR_002474617.2 mRNA upstream 295156 84097627 ~ 84110671 (-) False LOC110530947
TU103830 other downstream 315395 83484056 ~ 83485937 (-) True G94201
TU103453 other downstream 840010 82949614 ~ 82961322 (-) False LOC100301648
TU103475 other downstream 840010 82949614 ~ 82961322 (-) False LOC100301648
TU103482 other downstream 840010 82949614 ~ 82961322 (-) True LOC100301648
TU102047 other downstream 1499485 82295312 ~ 82301847 (-) True LOC110532782
TU104308 other upstream 356352 84158823 ~ 84160764 (-) False LOC110531033
TU104309 other upstream 356352 84158823 ~ 84160764 (-) True LOC110531033
TU104557 other upstream 401016 84203487 ~ 84204464 (-) True G94821
TU104675 other upstream 489289 84291760 ~ 84292623 (-) False LOC110532813
TU104684 other upstream 489289 84291760 ~ 84293583 (-) False LOC110532813

Expression Profile