RNA id: TU104123


Basic Information

Item Value
RNA id TU104123
length 232
lncRNA type intronic
GC content 0.45
exon number 1
gene id G94440
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 83948705 ~ 83948936 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAAAATGCTATTCTCCAGCATTAGTATTTGTTACGAAAGACAAAATACTCTTATATCTTCTCTTCTCCCTTAATGTATATGCCCCAGGAATGGGACTGTTCCAGGCAGCAGGACCTCTTCCCATACTCTCCTGTCCTAAGGTCCCAGTCTGCCAGAAACACATAGAGGCATTTGGCCCTTAAATCCCCTGTTTATTTGTCTTCACACCTGTGACCTAGACCCCTTTCTCCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104081 lncRNA upstream 13255 83872508 ~ 83935450 (+) True G94401
TU104053 lncRNA upstream 146356 83801618 ~ 83802349 (+) True G94379
TU103007 lncRNA upstream 171804 83776547 ~ 83776901 (+) True G93525
TU103006 lncRNA upstream 172299 83775980 ~ 83776406 (+) True G93524
TU103005 lncRNA upstream 173655 83774552 ~ 83775050 (+) True G93523
TU104132 lncRNA downstream 17615 83966551 ~ 83966754 (+) True G94449
TU104134 lncRNA downstream 18944 83967880 ~ 83968109 (+) True G94451
TU104135 lncRNA downstream 24335 83973271 ~ 83973671 (+) True G94452
TU104170 lncRNA downstream 43497 83992433 ~ 84073633 (+) True G94480
TU104149 lncRNA downstream 82618 84031554 ~ 84036458 (+) False G94461
XM_036987272.1 mRNA upstream 58711 83852566 ~ 83889994 (+) False LOC110530876
XM_036987259.1 mRNA upstream 58711 83852595 ~ 83889994 (+) False LOC110530876
XM_036987298.1 mRNA upstream 58711 83852595 ~ 83889994 (+) False LOC110530876
XM_036987280.1 mRNA upstream 58711 83852607 ~ 83889994 (+) False LOC110530876
XM_036987263.1 mRNA upstream 58711 83852612 ~ 83889994 (+) False LOC110530876
XM_036987350.1 mRNA downstream 28182 83977118 ~ 84031022 (+) True zgc:154058
XM_021614276.2 mRNA downstream 134054 84082990 ~ 84097350 (+) False LOC110530965
XM_021614264.2 mRNA downstream 134062 84082998 ~ 84096433 (+) False LOC110530965
XM_021614271.2 mRNA downstream 134062 84082998 ~ 84096433 (+) False LOC110530965
XM_021614251.2 mRNA downstream 134062 84082998 ~ 84097350 (+) False LOC110530965
TU102887 other upstream 399115 83511146 ~ 83549590 (+) True LOC110530763
TU102814 other upstream 475481 83472433 ~ 83473224 (+) True LOC110530741
TU102821 other upstream 615129 83333266 ~ 83333576 (+) True G93362
TU102659 other upstream 858773 83088531 ~ 83089932 (+) True G93204
TU101989 other upstream 1766909 82180946 ~ 82181796 (+) True G92575
TU104152 other downstream 96375 84045311 ~ 84048149 (+) True G94463
TU104770 other downstream 433821 84382757 ~ 84410052 (+) False LOC110532822
TU105595 other downstream 1191204 85140140 ~ 85141006 (+) True G95702
TU105730 other downstream 1285885 85234821 ~ 85235394 (+) True G95821
TU106091 other downstream 1688811 85637747 ~ 85638055 (+) True G96133

Expression Profile