RNA id: TU104152


Basic Information

Item Value
RNA id TU104152
length 2137
RNA type TUCP
GC content 0.44
exon number 4
gene id G94463
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 84045311 ~ 84048149 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cccacttgttgttgattcttcacaaaaaaatacagttttatatctttatgtttgaagcctgaaatgtggcaaaaggtcgcaaagttcaagggggccgaatactttcgcaaggcactgtatgtgtgtgactgtgtatgttTCTGGAGGTATTCTCACACAGGGTCAGCAGAGGGTCAACACAGGTTCTGACCAGTTTGGTTAATCTAGCCCAAAGAGGGCAGAATAGGTTTGAGCACTTCTGATTGGATGTGAATTTAACCTGGTTGGAGGGGACGGGGTATGAGACATCAGACCGGTTGGTTGCTGTATCAGAATGCACACGTTACAATAACAGCCAAATCAAACAGtaacattgcacacacacacatacacacacacacgtcactctctctcccccgctctctcagCCATACAACTCTACATCAGACCTCTACTCAACATCcccctcagagagaaagagagagacagatagagacagatagagaggggggagagaaggaaagagtgagacagagtgagaaagagagagagagagagagaggggcgaggtgGAGAGAGTGGTAATGATGAGAGCCTGCCACATGTCAATGGGGTAGTCTATCAATGGAATACCATCCATATGCTCCCATAGTAAATGTGTTAGAGTTTGTTCAAGTGTTCAAGGAACACAGACAGATTAACAGCTGTAACTTCCTActtgccaatatatcctccagaCAGCGGCTTccagggcattatcacttttatacaaccggttaccaacatattcataCTATATTATTCTTCCACAAGATacagtcccgacacaaatctggggttgctacccaagccggctggtcgttcacTCTATTGGTTCGGTTGCTAGAaacgcgacccagttgttcagtcattttgatctgtatctatggacgtgacccagtcgttcagtctttttgttctgtatcgatggacgtgacccagtcgttcagtctttttgttctgtatcgatggacgtgacccagtcgttcagtctttttgttctgtatctatggacgtctATCCGACATTTGCAagatttatacaaatctccgctgttaaAAACTAAACacagtctaaaagaaatgtgagataatgtcatGTGGCAGGCTCTCATCATTACCACTCTCTCcacctcgcccctctctctctctcatatgtaGTGTGaatagatgctttttatagtggagatcaactTTATAAatacctggctgggctgatgagacagtggattatgcagtcagatggaacagagtaaataggcattttaacatcatcgATTTAGCCGTTGGTAACGGTTTTAACCGTTAGccagctggaatgcggttttaacaaataagcattcaggattagacccacctgttgtatagCATACTATATACCAGGGTATTCAGATGCTACCCTACGAGGCCCGGACTAATGCTGTTTTTTTGTcctacctgataatgaattgcacccacctgatttgattgattgacctgGTGCTATATACACTTGAACCATGATTGTGTCAAACTGTGGCCATGCATCAAATGTATAATGTGCATCATCAACATTGAGTCACTATTCACACTACATATGATAGGTACAGGCTATTGCTGTGGCCCACAGCTAGAGAGTGGGAGTACTGTTAAAGAGCAGGTAGGTAGAGAGCAGGTAGATAgagagcaggtagagagagaacaggtagagagagaacaggtaggTAGAAAACAGGTAGATAGAGAACAGgtagaTAGAGAGCAGgtagaTAGAGAGCAGGTAGGTAGAAAGCCggttgagagagagaagacattAAGCAGGTAAAGAGCAGGTAGAATACAGccaggtgaacactcacctgGATGTCCCTCTCCAACAGACTCCGAAGTGAACATGAAGGACCCATCATCCAGCAGAGTGTCACTCATTTTGACACAGGCAGGTGCTCAGAACCACTAAAAAAAACAGAGAGAAACTTTCCAGTGAGAGCTTTATATCCCAGCTCGTTCTCTTGAGAGAGAGAAGgtacagcgagagagaaaaaagagagcgagagggttgCTGCCAATTGACTGTCTATCCAACAGAACTCCTGGACTATCTACACATGGTCCTATATATTGCtaagaaaaaacacaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104149 lncRNA upstream 8853 84031554 ~ 84036458 (+) False G94461
TU104150 lncRNA upstream 8853 84031554 ~ 84036458 (+) True G94461
TU104135 lncRNA upstream 71640 83973271 ~ 83973671 (+) True G94452
TU104134 lncRNA upstream 77202 83967880 ~ 83968109 (+) True G94451
TU104132 lncRNA upstream 78557 83966551 ~ 83966754 (+) True G94449
TU104140 lncRNA downstream 34916 84083065 ~ 84097350 (+) True LOC110530965
TU104142 lncRNA downstream 49484 84097633 ~ 84101389 (+) False G94458
TU104144 lncRNA downstream 49484 84097633 ~ 84101389 (+) True G94458
TU104226 lncRNA downstream 73665 84121814 ~ 84122093 (+) True G94529
TU104145 lncRNA downstream 87276 84135425 ~ 84152122 (+) False LOC110531025
XM_036987350.1 mRNA upstream 14289 83977118 ~ 84031022 (+) True zgc:154058
XM_021614192.2 mRNA upstream 93714 83903782 ~ 83951597 (+) True LOC110530893
XM_036987272.1 mRNA upstream 155317 83852566 ~ 83889994 (+) False LOC110530876
XM_036987259.1 mRNA upstream 155317 83852595 ~ 83889994 (+) False LOC110530876
XM_036987298.1 mRNA upstream 155317 83852595 ~ 83889994 (+) False LOC110530876
XM_021614276.2 mRNA downstream 34841 84082990 ~ 84097350 (+) False LOC110530965
XM_021614264.2 mRNA downstream 34849 84082998 ~ 84096433 (+) False LOC110530965
XM_021614271.2 mRNA downstream 34849 84082998 ~ 84096433 (+) False LOC110530965
XM_021614251.2 mRNA downstream 34849 84082998 ~ 84097350 (+) False LOC110530965
XR_005053181.1 mRNA downstream 60259 84108408 ~ 84112085 (+) True LOC110531002
TU102887 other upstream 495721 83511146 ~ 83549590 (+) True LOC110530763
TU102814 other upstream 572087 83472433 ~ 83473224 (+) True LOC110530741
TU102821 other upstream 711735 83333266 ~ 83333576 (+) True G93362
TU102659 other upstream 955379 83088531 ~ 83089932 (+) True G93204
TU101989 other upstream 1863515 82180946 ~ 82181796 (+) True G92575
TU104770 other downstream 334608 84382757 ~ 84410052 (+) False LOC110532822
TU105595 other downstream 1091991 85140140 ~ 85141006 (+) True G95702
TU105730 other downstream 1186672 85234821 ~ 85235394 (+) True G95821
TU106091 other downstream 1589598 85637747 ~ 85638055 (+) True G96133
TU106651 other downstream 2363058 86411207 ~ 86413212 (+) False G96577

Expression Profile