RNA id: TU104456


Basic Information

Item Value
RNA id TU104456
length 1714
lncRNA type antisense_over
GC content 0.39
exon number 1
gene id G94726
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 84111997 ~ 84113710 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTGTAATGGAGTCCTTTTAATATATGTCCACAAAACATGCTccaaacactaaatgtacatacataataaacatgggtacgaggacccgtcgcgcacctgtACAAACATAAACAACACtgacataaaacaatctctgacaaagacatgaggggaaaccgttcaaatgtttggggtcacttagaaatttccttttttttttttttttaagcatgttttttgtccattaaaataacatcaaatcgaTCAGAAAtacacagtgtagacattgttaatgttgtaaatgactattgtaactggaaacgtctgatttttttatggaatatctacataggcatacagaggcccattatcagcaaccatcactcctgtgttccaatggcacgttctgttagctaatccaagtttatacatttaaaaagataattgatcattagaaaacccttttgcaattatgataacacagctgaaaactgtagttctgattaaagaagcaataaaactggccttctttagattagttgagtatTTGGAACGTCAGCATTtgtaggttcgattacaggctcaaaatggccagaaacaaagacctttcttctgaaactcgtcaatctattcttgttctgagaaatgaaggctattccatgcgagaaattgccaagaaactgaagatctcgtacaaggctgtgtactactcctttcacagaacagcgcaaactggctctaaccagaaaagaaagatgagtgggaggccccggtgcacaactgagcaagggaaacgtacattagtgtgtctagtttgagaaacagatgccccacaagtcctcaactggcagcttcattagtagtacccacaaaacaccagtctcaacatcagcgtgaagaggtgactccgggatgctggcattctaggcaaggacatttctaagtgacctcaaactttggAACGGTAGTGCATATTTTATGGAAAAGAGATCTTGTATGTTTCTGGACaatgcaccatgctgccttgttgacaacatcaCCAAACGGTGCAGATTACTGTTCCATTTGGGAAGAGTGCTCCTCCCTCACCGCTTTGCCCGTTCATGTTACAGGCCATAGACCGGTGCCCCACTGCTCAGCATAATCAACTCCGCCCACAGAGATACACAGCACGCCCATCTGCCCTACCATTGGACACCTGTGGATGGCTTAGGACACATTAGCACCATCTCATTTGCTCTGGACAGTGACAATTGTCTTGGGAGGTATAAGAATACTACTTAACTACTCCCATACTAtagctcaatcaatcaatcaaatttattttatatagcccttcgtacatcagctgatatctcaaagtgctgtacagaaacccagcctaaaaccccaaacagcaagcaatgcaggtgaagaagcacggtggctaggaaaaactccctagaaaggccaaaacctaggaagaaacctagagaggaaccaggctatgtggggtggccagtcctcttctggctgtgccgggtggagattataacaaaacatggtcaagatgttcaaatgttcataaatgaccagcatggtcgaataataataaggcagaatagttgaaactggagcagcagcacagtcaggtggactggggacagcaaggagtcatcatgtcaggtagtcctggggcatggtcctagggctcaggtcctccgagagagagaaagagagaaggagagaattagag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104441 lncRNA downstream 7267 84031597 ~ 84104730 (-) False LOC110530927
TU104443 lncRNA downstream 7267 84031597 ~ 84104730 (-) True LOC110530927
TU104496 lncRNA downstream 64567 84046183 ~ 84047430 (-) True G94762
TU104492 lncRNA downstream 68690 84042636 ~ 84043307 (-) True G94759
TU104428 lncRNA downstream 135182 83976597 ~ 83976815 (-) True G94708
TU104519 lncRNA upstream 1069 84114779 ~ 84115147 (-) True G94783
TU104522 lncRNA upstream 4268 84117978 ~ 84118226 (-) True G94786
TU104526 lncRNA upstream 8082 84121792 ~ 84122010 (-) True G94790
TU104319 lncRNA upstream 37646 84151356 ~ 84152116 (-) True G94609
TU104318 lncRNA upstream 41456 84155166 ~ 84155531 (-) True G94608
XR_002474617.2 mRNA downstream 1326 84097627 ~ 84110671 (-) False LOC110530947
XM_021614242.2 mRNA downstream 1326 84097629 ~ 84110671 (-) True LOC110530947
XM_021614226.2 mRNA downstream 63867 84031554 ~ 84048130 (-) False LOC110530927
LOC110532804 mRNA downstream 144492 83966165 ~ 83967505 (-) True LOC110532804
XM_021614203.2 mRNA downstream 155039 83951057 ~ 83956958 (-) True si:ch211-198a12.6
XR_005053182.1 mRNA upstream 8981 84122691 ~ 84126832 (-) True LOC110531009
XM_021614340.2 mRNA upstream 43819 84157529 ~ 84197300 (-) False LOC110531033
XM_021614317.2 mRNA upstream 43819 84157529 ~ 84256948 (-) False LOC110531033
XM_036987414.1 mRNA upstream 43819 84157529 ~ 84256948 (-) False LOC110531033
XM_036987419.1 mRNA upstream 43819 84157529 ~ 84256949 (-) False LOC110531033
TU104323 other downstream 309526 83801332 ~ 83802471 (-) True G94613
TU103830 other downstream 626060 83484056 ~ 83485937 (-) True G94201
TU103453 other downstream 1150675 82949614 ~ 82961322 (-) False LOC100301648
TU104308 other upstream 45113 84158823 ~ 84160764 (-) False LOC110531033
TU104309 other upstream 45113 84158823 ~ 84160764 (-) True LOC110531033
TU104557 other upstream 89777 84203487 ~ 84204464 (-) True G94821
TU104675 other upstream 178050 84291760 ~ 84292623 (-) False LOC110532813
TU104684 other upstream 178050 84291760 ~ 84293583 (-) False LOC110532813

Expression Profile