RNA id: TU105357


Basic Information

Item Value
RNA id TU105357
length 560
RNA type TUCP
GC content 0.40
exon number 1
gene id G95494
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 84728864 ~ 84729423 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ataaaatacaccagaatgtaccagtaccagatcaatgtggagctataaacagggagtaccagtaccagatcaatgtggagctatatacagggagtaccagtaccagatcaatgtggagttatatacagggagtaccagtaccagatcaatgtggagctatatacagggagtaccagatcaatgtggagctataaacagggagtaccagtaccagatcaatgtggagctataaacagggagtaccagtaccagatcaatgtggagctatatacagggagtaccagtaccagatcaatctggagttatatacagggagtaccagtacccgatcaatgtggagctatatacagggagtaccagtacccgatcaatgtggagctatatacagggagtaccagatcaatgtggagctataaacagggagtaccagtaccagatcaatgtggagctataaacagggagtaccagtaccagatcaatgtggagatatatacagggagtaccagtaccagatcaatgtggagctatattcATGCACTACCTAAAGATTCTGTTTACCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU105356 lncRNA downstream 100 84728498 ~ 84728764 (-) True G95493
TU105158 lncRNA downstream 19040 84705028 ~ 84709824 (-) False G95316
TU105160 lncRNA downstream 19040 84705028 ~ 84709824 (-) True G95316
TU105190 lncRNA downstream 26964 84699685 ~ 84701900 (-) True G95345
TU105182 lncRNA downstream 40300 84688290 ~ 84688564 (-) True G95338
TU105363 lncRNA upstream 9332 84738755 ~ 84738975 (-) True G95499
TU105365 lncRNA upstream 10308 84739731 ~ 84739991 (-) True G95501
TU105366 lncRNA upstream 10645 84740068 ~ 84740291 (-) True G95502
TU105346 lncRNA upstream 20720 84750143 ~ 84751590 (-) True G95483
TU105349 lncRNA upstream 26193 84755616 ~ 84755806 (-) True G95486
XM_036989962.1 mRNA downstream 397164 84292293 ~ 84331700 (-) False LOC110532813
XM_036987419.1 mRNA downstream 471915 84157529 ~ 84256949 (-) False LOC110531033
XM_021614317.2 mRNA downstream 471916 84157529 ~ 84256948 (-) False LOC110531033
XM_036987414.1 mRNA downstream 471916 84157529 ~ 84256948 (-) False LOC110531033
XM_021614340.2 mRNA downstream 531564 84157529 ~ 84197300 (-) False LOC110531033
XM_036987540.1 mRNA upstream 30675 84760098 ~ 84781879 (-) True LOC110522386
XM_036989976.1 mRNA upstream 432327 85161750 ~ 85171855 (-) True LOC118966724
XM_036987580.1 mRNA upstream 442521 85171944 ~ 85207253 (-) False LOC110516660
XM_036987587.1 mRNA upstream 442521 85171944 ~ 85207253 (-) False LOC110516660
XM_036987589.1 mRNA upstream 453168 85182591 ~ 85207262 (-) False LOC110516660
TU104684 other downstream 435281 84291760 ~ 84293583 (-) False LOC110532813
TU104675 other downstream 436241 84291760 ~ 84292623 (-) False LOC110532813
TU104557 other downstream 524400 84203487 ~ 84204464 (-) True G94821
TU104308 other downstream 568100 84158823 ~ 84160764 (-) False LOC110531033
TU104309 other downstream 568100 84158823 ~ 84160764 (-) True LOC110531033
TU105500 other upstream 250310 84979733 ~ 84980272 (-) True G95624
TU105686 other upstream 428319 85157742 ~ 85159313 (-) True G95784
TU105884 other upstream 488970 85218393 ~ 85225150 (-) True LOC110510599
TU105901 other upstream 519786 85249209 ~ 85252317 (-) False LOC110510598
TU105902 other upstream 528973 85258396 ~ 85260532 (-) True LOC110510598

Expression Profile