RNA id: TU105289



Basic Information


Item Value
RNA id TU105289
length 362
lncRNA type intronic
GC content 0.37
exon number 2
gene id G95427
representative True

Chromosome Information


Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 84871326 ~ 84871812 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gagacatcagacagacaggtaggtatagacatcagacagacagggaggtagagacatcagacagacagggaggtatagacatcagacagacagggaagtatagacatcagacagacagcgaggtagagacatcagacagacagggaggtagagacatcagacagacagggaggtatagacatcagacagacagggaagtagagacaacagacagacagggtggtaGATACATCAGAGAGGTagagacatcagacagacagggaggtagagacaacagacagacagggaagtagagacaacagacagacagggaggtagagacatcagacagacaggtaggtatagacatcagacagacaggg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU105281 lncRNA upstream 15287 84855815 ~ 84856039 (+) True G95419
TU105270 lncRNA upstream 33278 84837706 ~ 84838048 (+) True G95408
TU105267 lncRNA upstream 35902 84835112 ~ 84835424 (+) True G95405
TU105265 lncRNA upstream 41574 84829540 ~ 84829752 (+) True G95403
TU105260 lncRNA upstream 51734 84819334 ~ 84819592 (+) True G95398
TU105293 lncRNA downstream 78008 84949820 ~ 84952021 (+) True G95430
TU105329 lncRNA downstream 82231 84954043 ~ 84954298 (+) True G95466
TU105331 lncRNA downstream 84087 84955899 ~ 84956132 (+) True G95468
TU105517 lncRNA downstream 118578 84990390 ~ 84990666 (+) True G95633
TU105564 lncRNA downstream 192412 85064224 ~ 85064603 (+) True G95675
XM_036987532.1 mRNA upstream 165352 84661027 ~ 84705974 (+) True LOC110532845
XM_021614420.2 mRNA upstream 220519 84613971 ~ 84650807 (+) False LOC110531174
XR_005053203.1 mRNA downstream 21466 84893278 ~ 84896681 (+) True LOC118966016
XM_036987563.1 mRNA downstream 141090 85012902 ~ 85159914 (+) False LOC110531368
XR_005053204.1 mRNA downstream 141091 85012903 ~ 85159908 (+) False LOC110531368
XR_005053205.1 mRNA downstream 141091 85012903 ~ 85159908 (+) False LOC110531368
XM_036987555.1 mRNA downstream 141091 85012903 ~ 85159914 (+) False LOC110531368
TU104770 other upstream 461274 84382757 ~ 84410052 (+) False LOC110532822
TU104152 other upstream 823177 84045311 ~ 84048149 (+) True G94463
TU102887 other upstream 1321736 83511146 ~ 83549590 (+) True LOC110530763
TU102814 other upstream 1398102 83472433 ~ 83473224 (+) True LOC110530741
TU102821 other upstream 1537750 83333266 ~ 83333576 (+) True G93362
TU105595 other downstream 268328 85140140 ~ 85141006 (+) True G95702
TU105730 other downstream 363009 85234821 ~ 85235394 (+) True G95821
TU106091 other downstream 765935 85637747 ~ 85638055 (+) True G96133
TU106651 other downstream 1539395 86411207 ~ 86413212 (+) False G96577
TU106653 other downstream 1539395 86411207 ~ 86413212 (+) False G96577

Expression Profile