RNA id: TU105449


Basic Information

Item Value
RNA id TU105449
length 1391
lncRNA type antisense_over
GC content 0.45
exon number 2
gene id G95574
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 84895195 ~ 84896609 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGTATTGGTTAAAAACATAACTGCAGAAGTAAAAAAAATGAATGTTTTTCTGATTAAAGGAAAAGTGAGTTAATGTGCTCTGTCTGCATGTACGATTCTTGGTGTATCATATCATACCATAAAGTATAATTGAAGCAAATTATAACAAATAAAACCTTTTCCTTTTTAAAATGGAACATTTTTTCACTACAGCCATTTTACCACCATTATTTTGTTAAATTATGTTAGATTTGAATACATAAGTAAATACCTGGTAACTAGGGAACCGTACTAAAAAGAGACATATTTCTAAGTGATAGTGAGAACCAGAGATTTTACCACCCGACGGGTAGTTTAGTCCATagtgtgagtctctctctctggctgttgtTGCGTCCTCGAAGTCCTTTTCCTTCTTGCTTTTCTAAGATGtagtttccttctctctctgtttctggtTTTGAGCAGTAGGCTTATTGTCCCAATGCAGGCTGCGCTGTACCACAGTCAGTGGCAGCATCAATCCATCCATAAACATCTTCTTTCAATTCATCCatgtcttctttttttatatatttttcatatCAACAACCTATTTTTTTCCACAATGATTAACAAATGTCCCCTTTAATCTACACAAAATAAGACGCATGAAAAGGCCATGGTAAAGACCATGAAAAGACCATGGTAAAGACCATGAAAAGACCATGGTAAAGACCATGAAAAGACCATGGTAAAGACCATGAAAAGACCATGGTAAAGACCATGAAAAGACCAGCGTCAGGTGTCTTTTGAATATTCCATAACGTTCCTGTGTAGGCTTGCAAAATTCTAGTAGGGCGATTCCATGCCAAGATTTTTGTTATCTCAGATTCTTCTGccaattctcacatagaaacatcaattctcacatagaaacaTCATTTCTCACATAGAAACATCATTTCTCACATAGAAACATCATTGGGAAAATGGATGCTTCACAAGCTTTTCACATTTGTATCACCATTTATTTTTAggccattaaaaaaaatatacctGCCTGTAATCTGTGAACCTTACATGGTCTTTGTGTCATTATACTCCTTGTGTCTAAAACATAAAAATATACCTGCCTGTAATCTGTGAACCTTACATGGTCTTTGTGTCATTATACTCCTTGTGTCTAAAACATAAAAATATACCTGCCTGTAATCTGTGAACCTTACATGGTCTTTGTGTCATTATACTCCTTGTGTCTAAAACATAAAAATATACCTGCCTGTAATCTGTGAACCTTACATGGTCTTTGTGTCATTATACTCCTTGTGTCTAAAACATAAAAATATACCTGCCTGTAATCTGTGAACCTTACATGGTCTTTGTGTCATTATACTCCTTGTGTCTAAAACATAAAAATATACCTGCCTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU105433 lncRNA downstream 21426 84872428 ~ 84873769 (-) True G95565
TU105399 lncRNA downstream 41424 84851997 ~ 84853771 (-) True G95533
TU105414 lncRNA downstream 55070 84839808 ~ 84840125 (-) True G95548
TU105406 lncRNA downstream 71320 84823645 ~ 84823875 (-) True G95540
TU105401 lncRNA downstream 79796 84815137 ~ 84815399 (-) True G95535
TU105466 lncRNA upstream 19791 84916400 ~ 84916698 (-) True G95591
TU105519 lncRNA upstream 95427 84992036 ~ 84992270 (-) True G95635
TU105522 lncRNA upstream 97907 84994516 ~ 84994759 (-) True G95638
TU105667 lncRNA upstream 190998 85087607 ~ 85089075 (-) True G95766
TU105676 lncRNA upstream 227653 85124262 ~ 85125756 (-) True G95774
XM_036987540.1 mRNA downstream 113316 84760098 ~ 84781879 (-) True LOC110522386
XM_036989962.1 mRNA downstream 563495 84292293 ~ 84331700 (-) False LOC110532813
XM_036987419.1 mRNA downstream 638246 84157529 ~ 84256949 (-) False LOC110531033
XM_021614317.2 mRNA downstream 638247 84157529 ~ 84256948 (-) False LOC110531033
XM_036989976.1 mRNA upstream 265141 85161750 ~ 85171855 (-) True LOC118966724
XM_036987580.1 mRNA upstream 275335 85171944 ~ 85207253 (-) False LOC110516660
XM_036987587.1 mRNA upstream 275335 85171944 ~ 85207253 (-) False LOC110516660
XM_036987589.1 mRNA upstream 285982 85182591 ~ 85207262 (-) False LOC110516660
XM_036987592.1 mRNA upstream 290267 85186876 ~ 85207269 (-) True LOC110516660
TU105357 other downstream 165772 84728864 ~ 84729423 (-) True G95494
TU104684 other downstream 601612 84291760 ~ 84293583 (-) False LOC110532813
TU104675 other downstream 602572 84291760 ~ 84292623 (-) False LOC110532813
TU104557 other downstream 690731 84203487 ~ 84204464 (-) True G94821
TU104309 other downstream 734431 84158823 ~ 84160764 (-) True LOC110531033
TU105500 other upstream 83124 84979733 ~ 84980272 (-) True G95624
TU105686 other upstream 261133 85157742 ~ 85159313 (-) True G95784
TU105884 other upstream 321784 85218393 ~ 85225150 (-) True LOC110510599
TU105901 other upstream 352600 85249209 ~ 85252317 (-) False LOC110510598
TU105902 other upstream 361787 85258396 ~ 85260532 (-) True LOC110510598

Expression Profile