RNA id: TU105687



Basic Information


Item Value
RNA id TU105687
length 1140
lncRNA type antisense_over
GC content 0.57
exon number 2
gene id G95785
representative True

Chromosome Information


Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 85154592 ~ 85155923 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GACAATATGGACCCATTATCTTACTGATTATACCTATCTAATAGAGGACAATATGGACCCATTATCATACTGATTATACCTATCTAATAGAGGACAATATGGACCATTACCATACTGACTATACCTATCTAATAGAGGACAATATGGACCATTACCATACTGATTATACCTATCTAATCTTTTCAGATCTACATGAACTGCCAAAGTAGTAGGGGCTAGGATTTAGGGGCTAGCGTCTGTTTGGAATTGGGCTGTGGAGATCTACAGGTAAAGGCAGGTCTTTACCATGATCTTGACACCTGAGGGACAACAGGAACATTCCCACTAGAACTCCGTCTCTCCTGGTTCTCTTCTTCTCTGGATCTTGAAGGTTGATAGGAACATGATGTTAAAGCCAGAAAGTCCATCATCAGTCTGACAAAAACGGACAAAAAAATGGAACAATTATTAGTCTGTCAATCTATCCTTGTCTTTTGAAAAGCAAAGGCAAGTTCGAAAGTCTTCCCAGGCATGATGTAAATAAATGTATCAGTCCAATGGAATGACTTTGAGGTACTGCTAAATGACGTGAGCCCATGCACCAACTCTGATGACTTCTAAAATGGTGGAGGTCAAGTAGGAAATAATTTATATCAGTGCTTTTTGCAGTGAAATGAAAAGGTCTTGAACAGACCCAGACGGACTGACAGACCAACAGAAAGGTTTCCAGGCAGAAACTAgtgagagggaaggggaaagagagagagagggcggagggCAGAGGTCGACCATGCAGGTCATCATGGCAATCAAGTgtccaaggtgtgtgtgtgtctgtatgtgtctgtacactgtatgtgtgtctgtatctgtccaTCTGTTCATTCATCCATTCGTGTGCGTGTTtgcctctgcctgtctgtttcaGTGTGTCCGTCCGTCCATCCCTCCACATTAAACAGTGGTCAGTGTGTAAAGGTAGACATGGAGGGCCTTGCTCTCCTGCTCCAGTTGAGGCTGGAGCCGGGCCCTGCCTCCTCCTCGGCTGGCTCCTCCCGTTTACTCTGCAGCTTAGCATGGAGCTGGATGAAGCACTGGTCCCAGTCCTCTGGAAGCAGCAACATCAGGAAGCCCAGGCAGATGATCAACACGGCGATCAGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU105681 lncRNA downstream 17330 85136987 ~ 85137262 (-) True G95779
TU105678 lncRNA downstream 25539 85128454 ~ 85129053 (-) True G95776
TU105676 lncRNA downstream 28836 85124262 ~ 85125756 (-) True G95774
TU105667 lncRNA downstream 65517 85087607 ~ 85089075 (-) True G95766
TU105522 lncRNA downstream 159833 84994516 ~ 84994759 (-) True G95638
TU105689 lncRNA upstream 11198 85167121 ~ 85167410 (-) True G95787
TU105698 lncRNA upstream 24074 85179997 ~ 85181277 (-) True G95796
TU105704 lncRNA upstream 38422 85194345 ~ 85194808 (-) True G95802
TU105705 lncRNA upstream 41201 85197124 ~ 85197335 (-) True G95803
TU105710 lncRNA upstream 55623 85211546 ~ 85211758 (-) True G95808
XM_036987540.1 mRNA downstream 372713 84760098 ~ 84781879 (-) True LOC110522386
XM_036989962.1 mRNA downstream 822892 84292293 ~ 84331700 (-) False LOC110532813
XM_036987419.1 mRNA downstream 897643 84157529 ~ 84256949 (-) False LOC110531033
XM_021614317.2 mRNA downstream 897644 84157529 ~ 84256948 (-) False LOC110531033
XM_036989976.1 mRNA upstream 5827 85161750 ~ 85171855 (-) True LOC118966724
XM_036987580.1 mRNA upstream 16021 85171944 ~ 85207253 (-) False LOC110516660
XM_036987587.1 mRNA upstream 16021 85171944 ~ 85207253 (-) False LOC110516660
XM_036987589.1 mRNA upstream 26668 85182591 ~ 85207262 (-) False LOC110516660
XM_036987592.1 mRNA upstream 30953 85186876 ~ 85207269 (-) True LOC110516660
TU105500 other downstream 174320 84979733 ~ 84980272 (-) True G95624
TU105357 other downstream 425169 84728864 ~ 84729423 (-) True G95494
TU104684 other downstream 861009 84291760 ~ 84293583 (-) False LOC110532813
TU104675 other downstream 861969 84291760 ~ 84292623 (-) False LOC110532813
TU104557 other downstream 950128 84203487 ~ 84204464 (-) True G94821
TU105686 other upstream 1819 85157742 ~ 85159313 (-) True G95784
TU105884 other upstream 62470 85218393 ~ 85225150 (-) True LOC110510599
TU105901 other upstream 93286 85249209 ~ 85252317 (-) False LOC110510598
TU105902 other upstream 102473 85258396 ~ 85260532 (-) True LOC110510598
TU105927 other upstream 190935 85346858 ~ 85351766 (-) False G96002

Expression Profile