RNA id: TU105698



Basic Information


Item Value
RNA id TU105698
length 914
lncRNA type read_through
GC content 0.31
exon number 3
gene id G95796
representative True

Chromosome Information


Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 85179997 ~ 85181277 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TAACATTTCATCATTACACCATGTCAATATCAACCTCCTCCAAGACTCTTAAACATGTTCCAGATATACTGTACCTTAAAAACAACCATCATTATAACATTCTTAACCATTTTACTGCATTTCTTGAATCACCTTTTAATATCTTCCACTGTATATTTCCCAATGTTTTCAACCTTTTAATATCTTCCACTGTATATTTCCACTGTATATTTCCACTGTATATTTCCCAATGTTTTCAACCCTTTTGATATCTTCCACTGTATATTTCCCAATGTTTTCAACCTTTTAATATCTTCCACTGTATATTTCCACTGTATATTTCCCAATGTTTTCAACCCTTTTGATATCTTCCACTGTATATTTCCCAATGTTTTCAACCTTTTAATATCTTCCACTGTATATTTCCACTGTATATTTCCCAATGTTTTCAACCCTTTAATATCTTCCACTGTATATTTCCACTGTATATTTCCCAATGTTTTCAACCTTTTAATATCTTCCACTGTATATTTCCCAATGTTTTCAACCTTTTAATATCTTCCACTGTATATTTCCCAATGTTTTCAACCTTTTAATATCTTCCACTGTATATTTCCCAATGTTTTCACCCTTTTAATATCTTCCACTGTATATTTCCCAATGTTTTCAACCTTTTAATATCTTCCACTGTATATTTCCCAATGTTTTCAACCCTTTAATATCTTCCACTGTATATTTCCCAATGTTTTCAACCTTTTAATATCTTCCACTGTATATTTCCCAATGTTTTCAACCCTTTAATATCTTCCACTGTATATTTCCCAATGTTTTCAACCTTTTAACATATTTACCCGTTAATTATTATTTTAAAGAATTCCAGTCCCAGTTCATTTCAAATGTGTCTTCTTTTCTGTAATCAATGTCAATTCTCTCTC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU105689 lncRNA downstream 12587 85167121 ~ 85167410 (-) True G95787
TU105687 lncRNA downstream 24074 85154592 ~ 85155923 (-) True G95785
TU105681 lncRNA downstream 42735 85136987 ~ 85137262 (-) True G95779
TU105678 lncRNA downstream 50944 85128454 ~ 85129053 (-) True G95776
TU105676 lncRNA downstream 54241 85124262 ~ 85125756 (-) True G95774
TU105704 lncRNA upstream 13068 85194345 ~ 85194808 (-) True G95802
TU105705 lncRNA upstream 15847 85197124 ~ 85197335 (-) True G95803
TU105710 lncRNA upstream 30269 85211546 ~ 85211758 (-) True G95808
TU105881 lncRNA upstream 31587 85212864 ~ 85213064 (-) True G95965
TU105885 lncRNA upstream 36728 85218005 ~ 85218206 (-) True G95968
XM_036989976.1 mRNA downstream 8142 85161750 ~ 85171855 (-) True LOC118966724
XM_036987540.1 mRNA downstream 398118 84760098 ~ 84781879 (-) True LOC110522386
XM_036989962.1 mRNA downstream 848297 84292293 ~ 84331700 (-) False LOC110532813
XM_036987419.1 mRNA downstream 923048 84157529 ~ 84256949 (-) False LOC110531033
XM_021614317.2 mRNA downstream 923049 84157529 ~ 84256948 (-) False LOC110531033
XM_036987589.1 mRNA upstream 1314 85182591 ~ 85207262 (-) False LOC110516660
XM_036987592.1 mRNA upstream 5599 85186876 ~ 85207269 (-) True LOC110516660
XM_036987628.1 mRNA upstream 32105 85213382 ~ 85239583 (-) False LOC110510599
XM_036987631.1 mRNA upstream 32105 85213382 ~ 85244440 (-) False LOC110510599
XM_036987612.1 mRNA upstream 32105 85213382 ~ 85244441 (-) False LOC110510599
TU105686 other downstream 20684 85157742 ~ 85159313 (-) True G95784
TU105500 other downstream 199725 84979733 ~ 84980272 (-) True G95624
TU105357 other downstream 450574 84728864 ~ 84729423 (-) True G95494
TU104684 other downstream 886414 84291760 ~ 84293583 (-) False LOC110532813
TU104675 other downstream 887374 84291760 ~ 84292623 (-) False LOC110532813
TU105884 other upstream 37116 85218393 ~ 85225150 (-) True LOC110510599
TU105901 other upstream 67932 85249209 ~ 85252317 (-) False LOC110510598
TU105902 other upstream 77119 85258396 ~ 85260532 (-) True LOC110510598
TU105927 other upstream 165581 85346858 ~ 85351766 (-) False G96002
TU105929 other upstream 165581 85346858 ~ 85351766 (-) True G96002

Expression Profile