RNA id: TU107459


Basic Information

Item Value
RNA id TU107459
length 1243
lncRNA type read_through
GC content 0.41
exon number 2
gene id G97227
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 86482107 ~ 86596907 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aaaaggtacaaaaaaaaatcagcctcatttactgccttctTAAAAAATATAGCTCATATGGCTgacttgtttaaacaaatgtggtttctactgacaattgagatgtacaaactatggcataagggaacgaggAGCGGATAAGAGACAATccataatttcgattaagacataaatgagcgagctaggacggacgttgtcaaCtacttgttcagcacttttgaaatataCAAAAAAGGGAAAAGGGACCAAAGTATTAGTGTGAGGCACATggactactaacagcttactacacaacatacacttagtattactttcttagctacagtctACATATAACACACTCTCATGAAGACAGAACAGTCCAAGGGATTGGTGAAAGAAACGTCAAAGATTAGTCAAACATTAACAAGAAATCAGTGGTCTGGGATGGTCCAGTACCAGAATGGGTTCAGATCCAACCCATTGCTCTTTCAACATTCCTACCTTTACCTCTCTGTCTTATCCAATAAACAATCAACTGGTCCACTCTACCACAACAACAAAGATTGACAGGAAATCTATAACTAAGATCTCATGTACATTAAGTCTCTCAATAGGAGTTACTGCTGTTTATACTGTATCTGCCTTGTTTGTTTtaaaacagtcagtcagtggcatCCACAGGACAGACGACCAGTGAAATACTATCTGGACCACCAGGGTTGAAGAATGGATAGAGTTTCTTAGAAAATTTGGAGCGTGTGAAAGAGTAGATAtgagacctggcctccacattgtAGAAGGATACCTGTCCCTTCTCATAATCCACAAACACACCCACTTTCAGGGGCTTCTCTCTCAGTAAGAGGGTGAGAGGGGAATCAGCGTGAGCTGTGTACtttccatccttcagctccacagTCCAGTATCCTTTATAAGGGATCGGTCTAGACCTCTCATTCCTATTGATGGACCTTCTGACCACTCCCAAAGTCCACTCAGTCTTCCCCTCCACCTTCACCTCATAGTAGAACTTCCTTGAGAAGCCCACATTTCCGAGGACACCGGACCAATTTTTATACCTCTTCCTGTTGTCAGAGAGAACCTGATTTAGTTCTCCATGTCTCACTTGTTTCCCGTCATCAGACAGGATGAGGTTACGATGTGCAGTATCAGGGTCTAGAGTCACATCCACTGTGGAGAGAAACATACACTATGTAAACACAATGACACCAACACCAGTGGTATAATATACTATGCTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU107462 lncRNA downstream 154 86552470 ~ 86552902 (-) True G97228
TU107443 lncRNA downstream 14103 86466092 ~ 86538953 (-) False G97224
TU107445 lncRNA downstream 14103 86466092 ~ 86538953 (-) False G97224
TU107446 lncRNA downstream 14103 86466092 ~ 86538953 (-) True G97224
TU107444 lncRNA downstream 14303 86466092 ~ 86538753 (-) False G97224
TU107423 lncRNA upstream 7179 86602365 ~ 86675768 (-) False G97209
TU107425 lncRNA upstream 7179 86602365 ~ 86669472 (-) False G97209
TU107427 lncRNA upstream 7179 86602365 ~ 86635782 (-) True G97209
TU107511 lncRNA upstream 32756 86627942 ~ 86628662 (-) True G97263
TU107512 lncRNA upstream 33676 86628862 ~ 86629165 (-) True G97264
XM_036987786.1 mRNA downstream 150892 86353680 ~ 86402164 (-) True LOC110532855
XM_036987797.1 mRNA downstream 203286 86299040 ~ 86349770 (-) True LOC110531245
XM_036987774.1 mRNA downstream 265539 86235239 ~ 86287517 (-) True LOC110531234
XM_036987761.1 mRNA downstream 329104 86222196 ~ 86223952 (-) True LOC110513354
XM_036987696.1 mRNA downstream 505880 85892523 ~ 86047176 (-) True LOC110531925
XM_036987939.1 mRNA upstream 7136 86602322 ~ 86650143 (-) False LOC118966040
XM_036987922.1 mRNA upstream 7136 86602322 ~ 86650146 (-) False LOC118966040
XM_036987937.1 mRNA upstream 7136 86602322 ~ 86650167 (-) False LOC118966040
XM_036987927.1 mRNA upstream 8121 86603307 ~ 86650148 (-) True LOC118966040
XM_036987911.1 mRNA upstream 68329 86663515 ~ 86698225 (-) False LOC118936335
TU107372 other downstream 159967 86392561 ~ 86393089 (-) True G97176
TU107204 other downstream 401717 86146009 ~ 86151339 (-) False G97047
TU105927 other downstream 1201290 85346858 ~ 85351766 (-) False G96002
TU105929 other downstream 1201290 85346858 ~ 85351766 (-) True G96002
TU105902 other downstream 1292524 85258396 ~ 85260532 (-) True LOC110510598
TU107596 other upstream 191871 86787057 ~ 86788052 (-) True G97308
TU107871 other upstream 699171 87294357 ~ 87294999 (-) True G97535
TU108928 other upstream 1318116 87913302 ~ 87915900 (-) False LOC110531505
TU109033 other upstream 1468276 88063462 ~ 88064854 (-) False pex13
TU109035 other upstream 1468276 88063462 ~ 88064914 (-) True pex13

Expression Profile