RNA id: TU107498


Basic Information

Item Value
RNA id TU107498
length 751
RNA type TUCP
GC content 0.57
exon number 2
gene id G97251
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 86566477 ~ 86623311 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aggagcactgctccagccctgcaaaatgacctccagcaggccacaaatgtgcatgtgtctgctcaaaagttccgaaacagactccatgagggtggtatgagggcccgacgtccacaggtgggggttgggcttacagcccaacaccgtgcaggacgtttggcatttgccagagaacaccaagattggcaaattcgccactggcgccctgtgctcttcacagatgaaagcaggttcacactgagcacgtgacagacgtgacagtctggagacgccgtggagaacattctgctgcctgcaacatcctccagcatgaccggtttggcggtgggtcagtcatggtgtggggtggcatttctttagggggcccgcacagccctccatgtgctcgccagaggtagcctgactgccattaggtaccgagatgagatcctcagaccccttgtgagaccatatgctggtgtggttggccctgggttcctcataatgcaagacaatgctagacctcatgtggctggagtgtgtcagcagttcctgcaagaggaaggcattgatgctatggactggcccgcccgttccccagacctgaatccaattgagcacatctgggacatcatgtctcgctccatccaccaacgccacgttgcaccacagactgtccaggagttggcggatgctttagtccaggtctgggaggagatccctcaggagaccatccgccacctcatcaggaacatgcccaggcgttgtaggg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU107462 lncRNA downstream 13575 86552470 ~ 86552902 (-) True G97228
TU107443 lncRNA downstream 27524 86466092 ~ 86538953 (-) False G97224
TU107445 lncRNA downstream 27524 86466092 ~ 86538953 (-) False G97224
TU107446 lncRNA downstream 27524 86466092 ~ 86538953 (-) True G97224
TU107444 lncRNA downstream 27724 86466092 ~ 86538753 (-) False G97224
TU107511 lncRNA upstream 4631 86627942 ~ 86628662 (-) True G97263
TU107512 lncRNA upstream 5551 86628862 ~ 86629165 (-) True G97264
TU107475 lncRNA upstream 83974 86707285 ~ 86707852 (-) True G97237
TU107524 lncRNA upstream 107608 86730919 ~ 86731550 (-) False LOC118966041
TU107525 lncRNA upstream 107608 86730919 ~ 86731236 (-) False LOC118966041
XM_036987786.1 mRNA downstream 164313 86353680 ~ 86402164 (-) True LOC110532855
XM_036987797.1 mRNA downstream 216707 86299040 ~ 86349770 (-) True LOC110531245
XM_036987774.1 mRNA downstream 278960 86235239 ~ 86287517 (-) True LOC110531234
XM_036987761.1 mRNA downstream 342525 86222196 ~ 86223952 (-) True LOC110513354
XM_036987692.1 mRNA downstream 519301 85892523 ~ 86047176 (-) False LOC110531925
XM_036987911.1 mRNA upstream 40204 86663515 ~ 86698225 (-) False LOC118936335
XR_005053238.1 mRNA upstream 48195 86671506 ~ 86698224 (-) False LOC118936335
XR_005053239.1 mRNA upstream 48195 86671506 ~ 86698224 (-) False LOC118936335
XR_005053240.1 mRNA upstream 48195 86671506 ~ 86698224 (-) False LOC118936335
XR_005053236.1 mRNA upstream 48195 86671506 ~ 86698225 (-) False LOC118936335
TU107372 other downstream 173388 86392561 ~ 86393089 (-) True G97176
TU107204 other downstream 415138 86146009 ~ 86151339 (-) False G97047
TU105927 other downstream 1214711 85346858 ~ 85351766 (-) False G96002
TU105929 other downstream 1214711 85346858 ~ 85351766 (-) True G96002
TU105902 other downstream 1305945 85258396 ~ 85260532 (-) True LOC110510598
TU107596 other upstream 163746 86787057 ~ 86788052 (-) True G97308
TU107871 other upstream 671046 87294357 ~ 87294999 (-) True G97535
TU108928 other upstream 1289991 87913302 ~ 87915900 (-) False LOC110531505
TU109033 other upstream 1440151 88063462 ~ 88064854 (-) False pex13
TU109035 other upstream 1440151 88063462 ~ 88064914 (-) True pex13

Expression Profile