RNA id: TU107430


Basic Information

Item Value
RNA id TU107430
length 1063
lncRNA type intronic
GC content 0.47
exon number 3
gene id G97211
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 86577760 ~ 86579800 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttattacacatcaacaacagggtttggtactaatactaccacacatcaacaacagggtttggtactaatactaccacacatcattacacatcaacaacagggtttagtactaatactaccacacacatcattacacatcaacaacagggtttggtactactactaccacacatcaacaacagggtttggtactaatactaccacacatcattacacatcaacaacagggtttggtactactattaccacacatcaacaacagggtttggtactaatactaccacacatcaacaacagggttgggtactaatactaccacacatcattacacatcaacaacagggtttggtactaatactaccacacatcattacacatcaacaacagggtttggtactaatactaccacacatcaacaacagggtttggtactaatactacaacacatcattacacatcaacaacagggtttggtactaatactaccacacatcaacaacagggtttggtactaatactaccacacatcattcaacaacagggtttggtactaatactaccacaaatcaacaacagggtttggtactaatactaccacacatcaacaacagggtttggtactaatactaccacacatcaacaacagggttgggtactaatactaccacacatcattacacatcaacaacagggtttggtactactactaccacacatcaacaacagggttgggTACTagtactaccacacatcattacacatcaacagcAGGGtttggtactactactaccacacatcaactaCAGGGTtgggtactaatactaccacacaccaacaacaggggtttggtactaatactaccacacatcattacacatcaacaacatggtttggtactaatactaccacacatcaacaacagggtttggtactaatactaccacacatcattcaacaacagggtttggtactaatactaccacacatcaacaacagggtttggtactaatactaccacacatcaacaacagggtttggtactaatactaacaaacatcaacaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU107502 lncRNA downstream 1791 86572941 ~ 86575969 (-) False G97255
TU107503 lncRNA downstream 1791 86572941 ~ 86575969 (-) True G97255
TU107429 lncRNA downstream 4891 86572169 ~ 86572869 (-) True G97210
TU107462 lncRNA downstream 24858 86552470 ~ 86552902 (-) True G97228
TU107446 lncRNA downstream 38807 86466092 ~ 86538953 (-) True G97224
TU107504 lncRNA upstream 200 86580000 ~ 86581036 (-) True G97256
TU107474 lncRNA upstream 1849 86581649 ~ 86707852 (-) False G97237
TU107477 lncRNA upstream 1849 86581649 ~ 86707852 (-) False G97237
TU107478 lncRNA upstream 1849 86581649 ~ 86707852 (-) False G97237
TU107457 lncRNA upstream 14540 86594340 ~ 86595186 (-) True G97227
XM_036987786.1 mRNA downstream 175596 86353680 ~ 86402164 (-) True LOC110532855
XM_036987797.1 mRNA downstream 227990 86299040 ~ 86349770 (-) True LOC110531245
XM_036987774.1 mRNA downstream 290243 86235239 ~ 86287517 (-) True LOC110531234
XM_036987761.1 mRNA downstream 353808 86222196 ~ 86223952 (-) True LOC110513354
XM_036987696.1 mRNA downstream 530584 85892523 ~ 86047176 (-) True LOC110531925
XM_036987939.1 mRNA upstream 22522 86602322 ~ 86650143 (-) False LOC118966040
XM_036987922.1 mRNA upstream 22522 86602322 ~ 86650146 (-) False LOC118966040
XM_036987937.1 mRNA upstream 22522 86602322 ~ 86650167 (-) False LOC118966040
XM_036987927.1 mRNA upstream 23507 86603307 ~ 86650148 (-) True LOC118966040
XM_036987911.1 mRNA upstream 83715 86663515 ~ 86698225 (-) False LOC118936335
TU107372 other downstream 184671 86392561 ~ 86393089 (-) True G97176
TU107204 other downstream 426421 86146009 ~ 86151339 (-) False G97047
TU105927 other downstream 1225994 85346858 ~ 85351766 (-) False G96002
TU105929 other downstream 1225994 85346858 ~ 85351766 (-) True G96002
TU105902 other downstream 1317228 85258396 ~ 85260532 (-) True LOC110510598
TU107596 other upstream 207257 86787057 ~ 86788052 (-) True G97308
TU107871 other upstream 714557 87294357 ~ 87294999 (-) True G97535
TU108928 other upstream 1333502 87913302 ~ 87915900 (-) False LOC110531505
TU109033 other upstream 1483662 88063462 ~ 88064854 (-) False pex13
TU109035 other upstream 1483662 88063462 ~ 88064914 (-) True pex13

Expression Profile