RNA id: TU107423


Basic Information

Item Value
RNA id TU107423
length 3052
lncRNA type read_through
GC content 0.43
exon number 8
gene id G97209
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 86602365 ~ 86675768 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gcattgttgccaaaaagttcaattttggtttcatctgaccagagcaccttcttccacctgtttggtgtgtctcccaggtggcttgtggcaaactttaaactacactttttatggatatctttaagaaatggctttcttcttgccactcttccataaaggccagatttgtgcaatatacgactgattgttgtcctatggacagagtctctcacctcagctgtagatctctgcagttcatccagagtgataatgggcctcttggctgcatctctgatcagtcttctccttgtatgagctgaaagtttagaggaacggccaggtcttggtagatttgcagtggtctgatactccttccatttcaatattatcgcttgcacagtgctccttgggatgtttaaagcttgggaaatctctttgtatccaaatccggctttaaacttcttcacaacagtatctcggacctgcctggtgtgttccttgttcttcatgatgctctctgcgcttttaacggacctctgagactatcacagtgcaggtgcatttatacggagacttgattacacacaggtggattgtatttatcatcattagtcatttaggccaacattggatcattcagagatcctcactgaacttctggagagagtttgctgcactgaaagtaaaggggctgaataattttgcacgcccaatttttcagtttttgatgtgttaaaaaagtttgaaatatccaataaatgtcgttccacttcatgattgtgccctacttgttgttgattcttcacaaaaaaatacagttttatatctttatgtttgaagcctgaaatgtggcaaaaggtcgcaaagttcaagggggccgaatactttcgcaaggcactgtacctgctggagcgcgtgctacgagtggctGCTGCTATGGTGAGATAAGGCAGGGcgttacctagcagagacttgtagatatcctgtagccagtgggtttagcGACGAGGGCCAAGCaaaacaaaacggatggcactgtgatagactgcatccaatttgttgagtagagtgttggaggctattttataaatgacatcgccgaagtctaggatcggtaggatggtcagttttacgagggtatgtttggcagcatgagtgaaggatgctttgttgcgatataggaagccgattctagatttaattttggattggagatgcttaatgtgagtctggaaggagagtttacagtctaaccagacacctaggtatttgtagttgtccatgtattctaagtcagagccgtccggtgtagtgatgctggacgggcgggcaggtgcgggcagtgatcgattgaatagcatgcatttagttttacttgcatttaagagcagttggaggccacggaaggagagttgtatggcattgaagctcgtcttgaggttagttaacacagtgtccaaaaaggGGCCAGAGGTAAACAGAATAGTGTCGTCTGcattagaggtggatcagagaatcacaagcagcaagagcgacatcattgatgtatacagagaagagagtcggcccgagaattgaaccctgtggcacccccatagagactgccagaggtccggacaacaggttctccgatttgacacactgaactctgtcagagaagtagttggtaaaccaggcgaggcaatcatttgagaaactagGGCTGTCGAGTCtgtcaataagaatgtggtgattgacagagtcgaaagccttggccaggtcgatgaataaggAGTCCCAGAGAGAGACTACATCTTCTAGTGTTCATGTTAATGATGTTCTCACTGTCTTCCATCTACTCTACATATTTACAGAGGTCCTCAGGATGGAGAATGAGGACTTCAAGAAGAAGTTTAACTTCGAGAACCTCTGGAACCAGAATAATGACATCACTAAGAAGCTAGATGTCCTCATGAAGGAGAGGGATGAAACCGAGGGACTCTGTAACCAGAGTGAGGGAACTCGTTAAGGTGAAGTAGGATGTGACTCTAGACCAGGGATACTCAAGTCCTATTTGAGACGGACCGGTGACACACATTTCCTAGGTGACAAAGGATCAGATGGAGAATCAGCGTAGTATCAACCCCCCAACTCACAACCCCAcgcaaactgttcacacccctcttgttggcgaCGAGaacatgttgcagttttaaagctgatttcctgcaattctacacattttgcatggGGGCAGAGATTTCTTTAGCTGTTTTATAGCTGATTTCCTGCAATTCTCCACATTCCTCCATGTCTTATGTGTGTTTATATGATACCAGGGGTCAAAGCCCGAcctattaaaaaaataaagagcACATTCTGCTCCTTCACTGAGAAACGCTCCATTCTTCATCCCTGGTATTATTGATAGTCTCTCAGTGGTCATCTGTCCTGTAGAcgtcactgactgactgttttaAAACAAACCAGGCTGGTATAAACAGTTAGCAATAGGAGAgagtttatttaacctttatttaactaggcaagtcagttaagaacaaattcttattttcaatgaaggcctaggaacagtgggttaactgtattgttcaagggcagaacgacagatttttacagctcagggattcagctcagggattcaatcttgcaaccttctggttactagtccaacactctaaccactaggctacctgcctctaaccactaggctacctgtacatGAGTCCTCAGATTTCCTGtcagtctttgttgttgttgtagactGGGCCAGTTGATTGTTTATTGGATAGGACAGAGAGGTAAAGGTAGGAATGTTGAAAGATAAATTGGATGGTTCTGAACGCCTGCTGGTACTGGACTATCCCAGACCACTGATTTCTTGTCAATGTTTGACGAATCTTTGACGTGTCTTTCACCCGTCCCTTGGACTGTTCTGTCTTGAGGAGAATGTGCTACATATTTTTATTCTCTGTGTTTTCTAACAGTATTTGTTATGTATCCATTCTGCTGTGTGCTTCAATATTTAGGTAAGAATTTAGCAGCAACACAAAATACATGTGTATGAATGTAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU107461 lncRNA downstream 5458 86553056 ~ 86596907 (-) False G97227
TU107459 lncRNA downstream 7179 86553056 ~ 86595186 (-) False G97227
TU107457 lncRNA downstream 7179 86594340 ~ 86595186 (-) True G97227
TU107504 lncRNA downstream 21329 86580000 ~ 86581036 (-) True G97256
TU107430 lncRNA downstream 22565 86577760 ~ 86579800 (-) True G97211
TU107475 lncRNA upstream 31517 86707285 ~ 86707852 (-) True G97237
TU107524 lncRNA upstream 55151 86730919 ~ 86731550 (-) False LOC118966041
TU107525 lncRNA upstream 55151 86730919 ~ 86731236 (-) False LOC118966041
TU107526 lncRNA upstream 55151 86730919 ~ 86732370 (-) False LOC118966041
TU107528 lncRNA upstream 55151 86730919 ~ 86731550 (-) False LOC118966041
XM_036987786.1 mRNA downstream 200201 86353680 ~ 86402164 (-) True LOC110532855
XM_036987797.1 mRNA downstream 252595 86299040 ~ 86349770 (-) True LOC110531245
XM_036987774.1 mRNA downstream 314848 86235239 ~ 86287517 (-) True LOC110531234
XM_036987761.1 mRNA downstream 378413 86222196 ~ 86223952 (-) True LOC110513354
XM_036987696.1 mRNA downstream 555189 85892523 ~ 86047176 (-) True LOC110531925
XR_005053241.1 mRNA upstream 55163 86730931 ~ 86732537 (-) False LOC118966041
XM_036990001.1 mRNA upstream 108056 86783824 ~ 86864120 (-) False LOC110518258
XM_036987970.1 mRNA upstream 250671 86926439 ~ 86954561 (-) True LOC118966043
XM_036990006.1 mRNA upstream 282130 86957898 ~ 87049090 (-) True LOC110532959
XM_036990012.1 mRNA upstream 486509 87162277 ~ 87166534 (-) True LOC118966727
TU107372 other downstream 209276 86392561 ~ 86393089 (-) True G97176
TU107204 other downstream 451026 86146009 ~ 86151339 (-) False G97047
TU105927 other downstream 1250599 85346858 ~ 85351766 (-) False G96002
TU105929 other downstream 1250599 85346858 ~ 85351766 (-) True G96002
TU105902 other downstream 1341833 85258396 ~ 85260532 (-) True LOC110510598
TU107596 other upstream 111289 86787057 ~ 86788052 (-) True G97308
TU107871 other upstream 618589 87294357 ~ 87294999 (-) True G97535
TU108928 other upstream 1237534 87913302 ~ 87915900 (-) False LOC110531505
TU109033 other upstream 1387694 88063462 ~ 88064854 (-) False pex13
TU109035 other upstream 1387694 88063462 ~ 88064914 (-) True pex13

Expression Profile