RNA id: TU106795


Basic Information

Item Value
RNA id TU106795
length 582
lncRNA type intronic
GC content 0.32
exon number 3
gene id G96688
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 86628478 ~ 86629323 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCCTATGAAATTACCTGTGTTTTGGAAACGTGGAGCcttagtgtaaaaacaaatgtattttacaGATTATCGGAGCTTTGGGTTCCCTGTTTTGTGGTTGGAAGTGTGTCTGACGTCGGCATCACATACCTGTGGCCTCAAGGTAAGTTTTGAATTGGATTACATATTGCCTATATAAACTGGTTCACagccagaagTTAGTTGAATTAGTAGCTATgttttcaaccatctaaaagcacatcCAATCTCCATTGGAAaaacaatgttttatttttgattttgttgttgtaaaaATGTCAACACCTGGGCTTTCAACTAATTTAAAGCACAGCAAAGTACAAATAGgaccttagatatctctgttttctttatattttggttaggtcagggtgtgacgaagGTGGGTatgttagtttttgtattgtctagggtttttgtatgtctaggggttttgtaggtctaggtcatttgtatgtctatgttggcctgatatggttcccaatcagaggcagctgtttatcgttgtctctgattggggatcatatttaggtagccatttcccctttTGTGTTCgtgtgttct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU106794 lncRNA upstream 60 86627940 ~ 86628418 (+) True G96687
TU106779 lncRNA upstream 27575 86599515 ~ 86600903 (+) True G96674
TU106711 lncRNA upstream 55998 86571972 ~ 86572480 (+) True G96630
TU106742 lncRNA upstream 57016 86564171 ~ 86571462 (+) True LOC118966035
TU106758 lncRNA upstream 61116 86518470 ~ 86567362 (+) True G96655
TU106797 lncRNA downstream 3126 86632449 ~ 86641456 (+) True G96690
TU106777 lncRNA downstream 5259 86634582 ~ 86637361 (+) True G96673
TU106801 lncRNA downstream 10234 86639557 ~ 86686575 (+) False G96693
TU106805 lncRNA downstream 10234 86639557 ~ 86686575 (+) True G96693
TU106809 lncRNA downstream 13581 86642904 ~ 86687916 (+) True G96695
XM_036987899.1 mRNA upstream 32907 86562981 ~ 86595571 (+) False LOC118966035
XM_036987946.1 mRNA downstream 107561 86736884 ~ 86756777 (+) True LOC110531632
XM_036987960.1 mRNA downstream 134964 86764287 ~ 86783717 (+) False LOC110516875
XM_036987949.1 mRNA downstream 134965 86764288 ~ 86783717 (+) False LOC110516875
XM_036987957.1 mRNA downstream 135307 86764630 ~ 86783717 (+) True LOC110516875
NM_001124330.1 mRNA downstream 741460 87370783 ~ 87373089 (+) True LOC100135993
TU106748 other upstream 132786 86492069 ~ 86495692 (+) False LOC118966033
TU106719 other upstream 167636 86460228 ~ 86460842 (+) False G96630
TU106659 other upstream 189006 86430202 ~ 86439472 (+) False LOC118966024
TU106660 other upstream 189006 86430202 ~ 86439472 (+) False LOC118966024
TU106654 other upstream 215266 86411207 ~ 86413212 (+) True G96577
TU108152 other downstream 1127718 87757041 ~ 87757546 (+) True G97752
TU108449 other downstream 1291684 87921007 ~ 87922414 (+) False LOC118966052
TU108569 other downstream 1501715 88131038 ~ 88144441 (+) False G98104
TU108570 other downstream 1501715 88131038 ~ 88144441 (+) False G98104
TU108836 other downstream 2007727 88637050 ~ 88744413 (+) True LOC118966060

Expression Profile