RNA id: TU106846


Basic Information

Item Value
RNA id TU106846
length 390
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G96726
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 86735229 ~ 86735618 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atgtgggtagtgatgcaccccagcattatgtagtttaactatgtgggtagtgttgcaccccagcattatgtagtttaactatgtgggtagtgaaccaccccagcattatgtagtttaactatgtgggtagtgatgcaccccagcattatgtagtttaactatgtgggtagtgatgcaccccagcattatgtagtttaactatgtgggtagtgaaccaccccagcattatgtagtttaactatgtgggtagtgatgcaccccagcattatgtagtttaactatgtgggtagtgttgcaccccagcattatgtagtttaactatgtgggtagtgatgcaccccagcattatgtagtttaactatgtgggtagtgttgcaccccagcattatg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU106845 lncRNA upstream 414 86732382 ~ 86734815 (+) True G96725
TU106838 lncRNA upstream 38496 86690611 ~ 86696733 (+) True G96719
TU106837 lncRNA upstream 39049 86692858 ~ 86696180 (+) True G96718
TU106835 lncRNA upstream 41860 86690002 ~ 86693369 (+) False G96718
TU106834 lncRNA upstream 55660 86677086 ~ 86679569 (+) True G96717
TU106847 lncRNA downstream 227 86735845 ~ 86736045 (+) True G96727
TU106851 lncRNA downstream 23264 86758882 ~ 86760019 (+) True G96731
TU106852 lncRNA downstream 25554 86761172 ~ 86761485 (+) True G96732
TU106854 lncRNA downstream 38857 86774475 ~ 86774929 (+) True G96734
TU106860 lncRNA downstream 54286 86789904 ~ 86790129 (+) True G96740
XM_036987899.1 mRNA upstream 139658 86562981 ~ 86595571 (+) False LOC118966035
XM_036987946.1 mRNA downstream 1266 86736884 ~ 86756777 (+) True LOC110531632
XM_036987960.1 mRNA downstream 28669 86764287 ~ 86783717 (+) False LOC110516875
XM_036987949.1 mRNA downstream 28670 86764288 ~ 86783717 (+) False LOC110516875
XM_036987957.1 mRNA downstream 29012 86764630 ~ 86783717 (+) True LOC110516875
NM_001124330.1 mRNA downstream 635165 87370783 ~ 87373089 (+) True LOC100135993
TU106748 other upstream 239537 86492069 ~ 86495692 (+) False LOC118966033
TU106719 other upstream 274387 86460228 ~ 86460842 (+) False G96630
TU106659 other upstream 295757 86430202 ~ 86439472 (+) False LOC118966024
TU106660 other upstream 295757 86430202 ~ 86439472 (+) False LOC118966024
TU106654 other upstream 322017 86411207 ~ 86413212 (+) True G96577
TU108152 other downstream 1021423 87757041 ~ 87757546 (+) True G97752
TU108449 other downstream 1185389 87921007 ~ 87922414 (+) False LOC118966052
TU108569 other downstream 1395420 88131038 ~ 88144441 (+) False G98104
TU108570 other downstream 1395420 88131038 ~ 88144441 (+) False G98104
TU108836 other downstream 1901432 88637050 ~ 88744413 (+) True LOC118966060

Expression Profile