RNA id: TU107567


Basic Information

Item Value
RNA id TU107567
length 2951
lncRNA type antisense_over
GC content 0.46
exon number 2
gene id G97283
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 86753745 ~ 86756765 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTGAAACACATGTATATTTAACGTTAAAAGACAGAGACAAGTAAAAGAGACAGCTGTGTTACAAAGATAGACGTCATCATTGCACATGAAACAAAGTCGTTATTCCTGTTGGTCAAAATACCATAAAACAAAATGGAGGACATACTTTATAGGCTGCgtgccagatctgtttgtgctaccATGTCATGCcactcattgtcatgccaacAGATTGTCTTGACAATTACATCgatggagttggcaagagcacaaccAGAGCTGGACCAGGCTACATACTTTAGGCTATTAGAAAAGTAGTTCCCCAGCAGAGAAAGGCGTTAGGAACAGATTTGGCAACTAGAAATTGAGAGAAAATACCTAAATCGCATTTCAAAAATAGAAATTATGCAAAATGTTAACACAAttagaataaataaaaaaatccttcATATAGTTTATTCAAGTACATATCTGCGATTGTTCCAGATTATTTCAACATATTCTCACGAATACTTTCAATTCGGTCAGCTTCGGGGTAAAAGATTTAAAAGTCATTATAAAAGTAAAGGGTTGTTCGATTGAAAGAGGATCATGTTAATTAGAGAAAGAATATTTAAACTTAATAAGCTCCTTCTCACAACCAGTTTCTGCTTTCCAAAAAATACATCATTCACTGTCAAACTATGTAGAGCCTCAGTATTCCAATGACAGATTGGCAACCTTTTCACATTTTTAAGGACATTATAGTTTAGAGACAATATATTCCCAAAGATCCTGACAAATCAGGGTGCATACAGTTTTGTATAAAACAGTTAATAACATATAATTGTCCTTTCTAGAGGGACAACCTTCCATTTCCAACATCTAAAAACTGCTTCAACAAACAATTAGTCTGAGTAGAAGTGGAATTGTGGAACAGAGTTGATACATTAGTGAGTTAGTACAACATAATTCCCCCCCATAAATCAGAGTAAATCATTTCCAGCAAACAGCAATAGTGATTCATTACaaagaaaaaaagaaatacaTTTGACCAGATAGATAAACGAGGCCACATTGGCCCATTTAGGATCAAATTAAATTAAAACGCTGTACTATCAAATGCCTGCTCCATTCTCATGTCAGAACTCAAAACATTGAGCCACGCCACCACTAGGTGGCAGCAGAACCATTACGCCACACCACCACTAGGTGGCAGCAGAACCACTACAGCACGCCACCAATAGGTGGCAGCAGAACAACTACACAACGCCACCACTAGGTGGCAGCAGAACCACTGCAGTAATATGATAATTATTTTGTCAATTtgaacattttagtcatttggaAAACATACATGTATCCCATAGACTGTATAAGATGCAACAGGAAAAGGCTGCTCTAACAACTTTGGCAGTTTCCTACATGTCCAAGGATTTCGATAAATACTATTCCGAGTCAATAATGAGAGCATGCCTTTATCAATGCCATGTGTCGTCCCAAATGGCTATCTATTCCTTACATAATGTcatgcttttaaccagagccctatggggcagaatgtagtgcactatatagggaacagggtgctgggCTCAGGttaaaataagtgcactatatagggaacaggctaCCATTTGTAACATAGCCCGTCTGACCATGCTTCCTCTCAATTCAAAAATAAAAAGTTCCAAAGAACATATGGTTGGTTTGGTTTCTTCAGTAAATGAAACCCATAGTAGCAAGGGTCTGGGACATCACTGATGGAGGCAACATCTATTCTCACAGCAATAGAAGGATAGTTGGCCTCGGTCTGCACTTTAACAGTTTAGTAAATGGAGTCAGCTCACCACCATATTTCTAACGTCCATTTAAGGCAAATGTCCACTTAGTCACGCATTGATGTCAATCTGAGACAAAGTGAAAATCTAATTGAAGTAGAAGTTAGGATTTGCTCTAATTGAACCTGCACTATATATCGACACAGATCCTTATGGTCCTAACTCCAATATTAGATACAGGCACCATAGTAGGCCATTGGGTCAGTAGGTTCCCAGTACATAAACAGAAAGTTAACTGTGGCTCTTCCTCAATATTTACCCCAAATATTTGAGAGACTTTTGTCATTCGAGGGGTTAATGTTTCACGTTCTGGGTTGACTATCGACAGAAAACTCCAGGTCAGTTAGTAAATGATTCTCCTTTCCATCTGCCTTGTGAGGTCACAGCCATGTCACGGTTAGGAGAGATTCCCTTTTTAGATTCAGACCACTCTCACCCAAAACCAGAAAGCAGCCTGGATTCATTCTAAAGGGCGAGGCTAACCTTCCTGTGGCTTTTACATACACTTATAGAATACTCCAAATAGGAAGTACCACTATATAAAACAAACTTTATCTAGGGCACTTTTTTCAGAGAAGTGAAATGACTCATGAACTGTTTTAAGAGGTATGGTAAAGGTGATCAGAGACGATTCGGGTTGACTCGGTCGTGTCacgagtagcagcagcagcatcgtAACCTTAGACACCAGAGggggctggtgaggggaggacggctaataataatgtctggaatggagtgaatgtaaTTACATCAAACACGAAGAAAACCATATCATTGATGTGTTTTGATACCGTTCAATTCATTTCGTTCCAGCCCTtgctatgagcccgtcctccgaATTGaagtgccaccagccaccactgattGTAACCATAGAGACAGAATTCACAGTTGTTTTACGAGTTCACAGGACAGACTCAATGGCTTCCGCGGTCTCCCTGGGGGATTGGTCGCCTGCTGAACCCAGGGTTTGGTGCGTGACGAGCGGGGAGGTCTCCTCGTCAGCCTGGGTGTTGGCCACCGCGTCCACCAGGACCTCCGCTAGCTCCTCCCCCAGGTGTTGTTTCTTCATCTCCTGTTGGTTGATGTGGTGGAGGATCCCTGCCCCCAGGGCGTCTCCCTCCACGTTCACTACGGTGGTGGTGCGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU107541 lncRNA downstream 13912 86737277 ~ 86739833 (-) False G97278
TU107542 lncRNA downstream 13912 86737277 ~ 86739833 (-) False G97278
TU107554 lncRNA downstream 13912 86737277 ~ 86739833 (-) True G97278
TU107530 lncRNA downstream 21211 86730919 ~ 86732534 (-) False LOC118966041
TU107526 lncRNA downstream 21375 86730919 ~ 86732370 (-) False LOC118966041
TU107571 lncRNA upstream 295 86757060 ~ 86757361 (-) True G97285
TU107573 lncRNA upstream 3423 86760188 ~ 86760829 (-) True G97287
TU107576 lncRNA upstream 8959 86765724 ~ 86765985 (-) True G97290
TU107580 lncRNA upstream 27188 86783953 ~ 86784308 (-) True LOC110518258
TU107600 lncRNA upstream 42263 86799028 ~ 86804675 (-) True G97312
XR_005053241.1 mRNA downstream 21208 86730931 ~ 86732537 (-) False LOC118966041
XR_005053236.1 mRNA downstream 55520 86671506 ~ 86698225 (-) False LOC118936335
XM_036987915.1 mRNA downstream 55520 86671590 ~ 86698225 (-) False LOC118936335
XR_005053237.1 mRNA downstream 55520 86671647 ~ 86698225 (-) True LOC118936335
XR_005053240.1 mRNA downstream 55521 86671506 ~ 86698224 (-) False LOC118936335
XM_036990001.1 mRNA upstream 27059 86783824 ~ 86864120 (-) False LOC110518258
XM_036987970.1 mRNA upstream 169674 86926439 ~ 86954561 (-) True LOC118966043
XM_036990006.1 mRNA upstream 201133 86957898 ~ 87049090 (-) True LOC110532959
XM_036990012.1 mRNA upstream 405512 87162277 ~ 87166534 (-) True LOC118966727
XM_036990021.1 mRNA upstream 411120 87167885 ~ 87204885 (-) True LOC118966728
TU107498 other downstream 130434 86566477 ~ 86623311 (-) True G97251
TU107372 other downstream 360656 86392561 ~ 86393089 (-) True G97176
TU107204 other downstream 602406 86146009 ~ 86151339 (-) False G97047
TU105927 other downstream 1401979 85346858 ~ 85351766 (-) False G96002
TU107596 other upstream 30292 86787057 ~ 86788052 (-) True G97308
TU107871 other upstream 537592 87294357 ~ 87294999 (-) True G97535
TU108928 other upstream 1156537 87913302 ~ 87915900 (-) False LOC110531505
TU109033 other upstream 1306697 88063462 ~ 88064854 (-) False pex13
TU109035 other upstream 1306697 88063462 ~ 88064914 (-) True pex13

Expression Profile