RNA id: TU106851



Basic Information


Item Value
RNA id TU106851
length 1138
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G96731
representative True

Chromosome Information


Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 86758882 ~ 86760019 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ATATAGAACAGAGAGATATAAAACAGATAGAGATATAGtggtctagttacagttttgacttaaatcagcttgaaaagctaaagaataatgtgcaaatattgtacactCCGGGTGTGCAAATCTTTTAGAGACTAACAGTCCTGCTGCATACATATTATAtgtgggtggtcccgggaatcaaacccactaccctggtggTACAAGCGCTATGCTCTTCCAATTTAGCTAAAATGGACCACAACAGCTACAAGTCTCGTTGTACCTTGTTTAATGTTGCAAAGCCTACTACAGATGGTTGGCTCAGTGTTAAGCCCCATAATCAGTTCAGTTCATTTATTAGGCCTTTTACAGGAAATGTGTCCAGCATTCAAGAGCACTATGTCAAAGACATAAAACCATCAACACATAGAACCACATAGAACATCAACCACATAGAACAGATAGATTTACACAGGTAGGATATAgaacagatagagatatagaacAAATCGAGATATACACAGGTAGGACAGAGATAAGAGATATAgaacagatatagatatagaacTGATAGATATAAATAGGTAGGATATAGATTAGATAGGGATATAGAACAGATAGAGAAATACACAGGTAGGATATAGATTAGATAGAGAAATAGAACAGATATAGATATAGCACTGATAGAGATATACACAGGGAGGACAGAGAAAATAGATATATAGAACAGCTATAGATCTGATAGATATAAAGAGGTAGGATATAgattatatagagatatagaacagatatagatatagaacagatagagatatagaacagATAGAGATATACACAGGTAggatatatattatatagatatatagaacAGATATAGATATATAACTGAGATAAAgaacagatatagatatagaacagacagatatagagcaGATGTAaaacagatagagatatagaacagATATAGATTTAGAACAGATACAAGAGAGATAAAGAACAGAcagagatttaaaaaaacagatatagTACAGATATAGATTTAGAACAAACTCTTAAAGACcttgtaatattttacatcaatagcagtcaatattaatcggcatcttaattcagtctcatctgaaagttgtaaattcttggttatctgcacgaaccctgg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU106847 lncRNA upstream 22837 86735845 ~ 86736045 (+) True G96727
TU106846 lncRNA upstream 23264 86735229 ~ 86735618 (+) True G96726
TU106845 lncRNA upstream 24067 86732382 ~ 86734815 (+) True G96725
TU106838 lncRNA upstream 62149 86690611 ~ 86696733 (+) True G96719
TU106837 lncRNA upstream 62702 86692858 ~ 86696180 (+) True G96718
TU106852 lncRNA downstream 1153 86761172 ~ 86761485 (+) True G96732
TU106854 lncRNA downstream 14456 86774475 ~ 86774929 (+) True G96734
TU106860 lncRNA downstream 29885 86789904 ~ 86790129 (+) True G96740
TU106885 lncRNA downstream 64569 86824588 ~ 86824907 (+) True G96761
TU106886 lncRNA downstream 65057 86825076 ~ 86825286 (+) True G96762
XM_036987946.1 mRNA upstream 2105 86736884 ~ 86756777 (+) True LOC110531632
XM_036987899.1 mRNA upstream 163311 86562981 ~ 86595571 (+) False LOC118966035
XM_036987960.1 mRNA downstream 4268 86764287 ~ 86783717 (+) False LOC110516875
XM_036987949.1 mRNA downstream 4269 86764288 ~ 86783717 (+) False LOC110516875
XM_036987957.1 mRNA downstream 4611 86764630 ~ 86783717 (+) True LOC110516875
NM_001124330.1 mRNA downstream 610764 87370783 ~ 87373089 (+) True LOC100135993
XM_036987979.1 mRNA downstream 716485 87476504 ~ 87645034 (+) False LOC118966047
TU106748 other upstream 263190 86492069 ~ 86495692 (+) False LOC118966033
TU106719 other upstream 298040 86460228 ~ 86460842 (+) False G96630
TU106659 other upstream 319410 86430202 ~ 86439472 (+) False LOC118966024
TU106660 other upstream 319410 86430202 ~ 86439472 (+) False LOC118966024
TU106654 other upstream 345670 86411207 ~ 86413212 (+) True G96577
TU108152 other downstream 997022 87757041 ~ 87757546 (+) True G97752
TU108449 other downstream 1160988 87921007 ~ 87922414 (+) False LOC118966052
TU108569 other downstream 1371019 88131038 ~ 88144441 (+) False G98104
TU108570 other downstream 1371019 88131038 ~ 88144441 (+) False G98104
TU108836 other downstream 1877031 88637050 ~ 88744413 (+) True LOC118966060

Expression Profile