RNA id: TU107596


Basic Information

Item Value
RNA id TU107596
length 903
RNA type TUCP
GC content 0.38
exon number 2
gene id G97308
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 86787057 ~ 86788052 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCTCTATGTATTACTGTAGTAGAGCTactgtatacaaaacacagggctcTATGTATTACTGTAGTAGAGCTactgtatacaaaacacagggctctatgtattactgtagtagagctactgtatacaacacacagggctctatgtattactgtagtagacctactgtatacaaaacacagggctcTATGTATTACTGTAGTAGAGCTactgtatacaaaacacagggctcTATGTATTACTGTAGTAGAGCTactgtatacaaaacacagggctctatgtattactgtagtagacctactgtatacaaaacacagggctcTATGTATTACTGTAGacctactgtatacaaaacacagggctcTATGTATTACTGTAGTAGAGCTactgtatacaaaacacagggctctatgtattactgtatacaaaacacagggctctatgtattactgtagacctactgtatacaaaacacagggctctatgtattactgtagacctactgtatacaaCACAAAGGGCTCTATGTATTACTGTAGTAGACTTactgtatacaaaacacagggctctatgtattactgtagtagacctactgtatacaaaacacagggctcTATATATTACTGTAGTAGAgctactgtatacaacacacagggctctatgtattactgtagtagacctactgtatacaaCACACAGGGCTCTATGTATTACTGTAGTAGAGCTactgtatacaaaacacagggctctatgtattactgtagacctactgtatacaaaacacagggctctatgtattactgtagacctactgtatacaaaacacagggctctatgtattactgtagacctactgtatacaacacaaagggctctatgtattactgtagacctactgtatacaaC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU107580 lncRNA downstream 2749 86783953 ~ 86784308 (-) True LOC110518258
TU107576 lncRNA downstream 21072 86765724 ~ 86765985 (-) True G97290
TU107573 lncRNA downstream 26228 86760188 ~ 86760829 (-) True G97287
TU107571 lncRNA downstream 29696 86757060 ~ 86757361 (-) True G97285
TU107567 lncRNA downstream 30292 86753745 ~ 86756765 (-) False G97283
TU107600 lncRNA upstream 10976 86799028 ~ 86804675 (-) True G97312
TU107601 lncRNA upstream 12391 86800443 ~ 86806508 (-) True G97313
TU107604 lncRNA upstream 18787 86806839 ~ 86807162 (-) True G97315
TU107677 lncRNA upstream 125504 86913556 ~ 87104621 (-) True G97377
TU107679 lncRNA upstream 125772 86913824 ~ 86914345 (-) True G97379
XR_005053241.1 mRNA downstream 54520 86730931 ~ 86732537 (-) False LOC118966041
XM_036987911.1 mRNA downstream 88832 86663515 ~ 86698225 (-) False LOC118936335
XR_005053236.1 mRNA downstream 88832 86671506 ~ 86698225 (-) False LOC118936335
XM_036987915.1 mRNA downstream 88832 86671590 ~ 86698225 (-) False LOC118936335
XR_005053237.1 mRNA downstream 88832 86671647 ~ 86698225 (-) True LOC118936335
XM_036987970.1 mRNA upstream 138387 86926439 ~ 86954561 (-) True LOC118966043
XM_036990006.1 mRNA upstream 169846 86957898 ~ 87049090 (-) True LOC110532959
XM_036990012.1 mRNA upstream 374225 87162277 ~ 87166534 (-) True LOC118966727
XM_036990021.1 mRNA upstream 379833 87167885 ~ 87204885 (-) True LOC118966728
XM_036990028.1 mRNA upstream 419412 87207464 ~ 87230079 (-) True LOC118966729
TU107498 other downstream 163746 86566477 ~ 86623311 (-) True G97251
TU107372 other downstream 393968 86392561 ~ 86393089 (-) True G97176
TU107204 other downstream 635718 86146009 ~ 86151339 (-) False G97047
TU105927 other downstream 1435291 85346858 ~ 85351766 (-) False G96002
TU105929 other downstream 1435291 85346858 ~ 85351766 (-) True G96002
TU107871 other upstream 506305 87294357 ~ 87294999 (-) True G97535
TU108928 other upstream 1125250 87913302 ~ 87915900 (-) False LOC110531505
TU109033 other upstream 1275410 88063462 ~ 88064854 (-) False pex13
TU109035 other upstream 1275410 88063462 ~ 88064914 (-) True pex13
TU109129 other upstream 1430777 88218829 ~ 88220804 (-) False G98510

Expression Profile