RNA id: TU106896


Basic Information

Item Value
RNA id TU106896
length 228
lncRNA type intronic
GC content 0.38
exon number 2
gene id G96772
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 86837331 ~ 86837633 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCAAAAAATAACACTGCAATCTAATCCTTCCAGAAATGACATACAACACAGCATCATGAAGAGAATAAGTAAGACAGGAGGTTAAGTATCTCTGGTGTTATATATGTGATAGCCAGGCCCCAGATCAGTTTGAGCTGTAAGAGAGAACGTTTAGTATTATCTCTGCTGTTATAAATATGATAGccaggtcccagatcagtttgagcTGTAAGACAGGAAGTTTAGTAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU106886 lncRNA upstream 12045 86825076 ~ 86825286 (+) True G96762
TU106885 lncRNA upstream 12424 86824588 ~ 86824907 (+) True G96761
TU106860 lncRNA upstream 47202 86789904 ~ 86790129 (+) True G96740
TU106854 lncRNA upstream 62402 86774475 ~ 86774929 (+) True G96734
TU106852 lncRNA upstream 75846 86761172 ~ 86761485 (+) True G96732
TU106903 lncRNA downstream 7182 86844815 ~ 86845434 (+) True G96777
TU106936 lncRNA downstream 59378 86897011 ~ 86897593 (+) True G96808
TU106952 lncRNA downstream 75586 86913219 ~ 87103266 (+) False G96820
TU106953 lncRNA downstream 75896 86913529 ~ 87103266 (+) True G96820
TU106971 lncRNA downstream 106279 86943912 ~ 86944249 (+) True G96838
XM_036987960.1 mRNA upstream 53614 86764287 ~ 86783717 (+) False LOC110516875
XM_036987949.1 mRNA upstream 53614 86764288 ~ 86783717 (+) False LOC110516875
XM_036987957.1 mRNA upstream 53614 86764630 ~ 86783717 (+) True LOC110516875
XM_036987946.1 mRNA upstream 80554 86736884 ~ 86756777 (+) True LOC110531632
XM_036987900.1 mRNA upstream 241760 86563789 ~ 86595571 (+) False LOC118966035
NM_001124330.1 mRNA downstream 533150 87370783 ~ 87373089 (+) True LOC100135993
XM_036987979.1 mRNA downstream 638871 87476504 ~ 87645034 (+) False LOC118966047
XM_036987993.1 mRNA downstream 638871 87476504 ~ 87645034 (+) False LOC118966047
XM_036987983.1 mRNA downstream 638871 87476504 ~ 87645035 (+) False LOC118966047
XM_036987989.1 mRNA downstream 638871 87476504 ~ 87645035 (+) False LOC118966047
TU106748 other upstream 341639 86492069 ~ 86495692 (+) False LOC118966033
TU106719 other upstream 376489 86460228 ~ 86460842 (+) False G96630
TU106659 other upstream 397859 86430202 ~ 86439472 (+) False LOC118966024
TU106660 other upstream 397859 86430202 ~ 86439472 (+) False LOC118966024
TU106654 other upstream 424119 86411207 ~ 86413212 (+) True G96577
TU108152 other downstream 919408 87757041 ~ 87757546 (+) True G97752
TU108449 other downstream 1083374 87921007 ~ 87922414 (+) False LOC118966052
TU108569 other downstream 1293405 88131038 ~ 88144441 (+) False G98104
TU108570 other downstream 1293405 88131038 ~ 88144441 (+) False G98104
TU108836 other downstream 1799417 88637050 ~ 88744413 (+) True LOC118966060

Expression Profile