RNA id: TU108094



Basic Information


Item Value
RNA id TU108094
length 643
lncRNA type intronic
GC content 0.44
exon number 2
gene id G97713
representative False

Chromosome Information


Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 87656556 ~ 87657434 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TCCCTAAGGACAGACACACTGCCCTGTCCTGAGCAATCACTCTCCAGTGGTCACTAAGCAGTGTCCTTTTAAAGGGTAGTCTCTAGCTCTCCAGTGGTCACTAGACAGTGTGCTTCTAAAGGGCAGTGTCTATCTACTagccatgtcctgctctgtcagGGTGTCTGTCTCCAAGGTTCACTGTCGGATAATGATCAATCAATACATGTACTGACAGATGTCTAATTTTGAACAATGCCCTGACCTGTGCAATCACTTTTAGTAGGCATTAGACAATGCCCCCTTTTAAACGGTACTAGTACCTACTAGCAAGTAgccatgtcctggtctgtccctttttaaaggttaccagtatctagtaaccatgtcctggtctgtcccctTTTAAAGGTTACCAGTATCTAGTAGCTAGTAaccatgtcctggtctgtccccttttaaaggttaccagtatctagtaaccatgtcctggtctgtcccctTTTAAAGGTTACCAGTATCTAGTAGCTAGTAaccatgtcctggtctgtccccttttaaagGTTACCAGTATCTAGTAgccatgtcctggtctgtcccctTTTAAAGGTTACCAGTATCTAGTAACCGTCCTGATCTGTCCCCTTTTAAAGGTTACCAGTAT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU108060 lncRNA upstream 68038 87587850 ~ 87588518 (+) True G97685
TU108054 lncRNA upstream 78712 87577330 ~ 87577844 (+) True G97681
TU108036 lncRNA upstream 110613 87545647 ~ 87545943 (+) True G97664
TU107931 lncRNA upstream 122564 87414387 ~ 87533992 (+) True G97585
TU107935 lncRNA upstream 207720 87417682 ~ 87448836 (+) True G97588
TU108102 lncRNA downstream 21554 87678988 ~ 87679262 (+) True G97719
TU108117 lncRNA downstream 36543 87693977 ~ 87701058 (+) True G97723
TU108126 lncRNA downstream 51402 87708836 ~ 87709164 (+) True G97729
TU108129 lncRNA downstream 66355 87723789 ~ 87724196 (+) True G97732
TU108143 lncRNA downstream 86980 87744414 ~ 87744944 (+) True G97745
XM_036987999.1 mRNA upstream 11519 87476504 ~ 87645037 (+) True LOC118966047
XM_036987983.1 mRNA upstream 11521 87476504 ~ 87645035 (+) False LOC118966047
XM_036987989.1 mRNA upstream 11521 87476504 ~ 87645035 (+) False LOC118966047
XM_036987979.1 mRNA upstream 11522 87476504 ~ 87645034 (+) False LOC118966047
XM_036987993.1 mRNA upstream 11522 87476504 ~ 87645034 (+) False LOC118966047
XM_036988060.1 mRNA downstream 263534 87920968 ~ 87928366 (+) False LOC118966052
XM_036988064.1 mRNA downstream 263534 87920968 ~ 87928366 (+) False LOC118966052
XM_036988066.1 mRNA downstream 296431 87953865 ~ 88022972 (+) False LOC110517253
XM_036988069.1 mRNA downstream 296876 87954310 ~ 88021570 (+) False LOC110517253
XM_036988080.1 mRNA downstream 296910 87954344 ~ 88021570 (+) False LOC110517253
TU106748 other upstream 1160864 86492069 ~ 86495692 (+) False LOC118966033
TU106719 other upstream 1195714 86460228 ~ 86460842 (+) False G96630
TU106659 other upstream 1217084 86430202 ~ 86439472 (+) False LOC118966024
TU106660 other upstream 1217084 86430202 ~ 86439472 (+) False LOC118966024
TU106654 other upstream 1243344 86411207 ~ 86413212 (+) True G96577
TU108152 other downstream 99607 87757041 ~ 87757546 (+) True G97752
TU108449 other downstream 263573 87921007 ~ 87922414 (+) False LOC118966052
TU108569 other downstream 473604 88131038 ~ 88144441 (+) False G98104
TU108570 other downstream 473604 88131038 ~ 88144441 (+) False G98104
TU108836 other downstream 979616 88637050 ~ 88744413 (+) True LOC118966060

Expression Profile