RNA id: TU108117


Basic Information

Item Value
RNA id TU108117
length 1474
lncRNA type intronic
GC content 0.42
exon number 7
gene id G97723
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 87693977 ~ 87701058 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ataccatggctatatacaggaagtagagggtaacaacatggctatatacaggaagtagagggtaataccatggctatatacaggaagtagagggtaacaacatggctatatacaggaagtagagggtaacaacatggctatatacaggaagtagagggtaacaacatggctatatacaggaagtagagggtaacaacatggctatatacaggaagtagagggtaacaacatggctatatacaggaagtagagggtaataccatggctatatacaggaagtagagggtaataccatggctatatacaggaagtagagggtaacaacatggctatatacaggaagtagagggtaacaacatggctatatacaggaagtagagggtaacaacatggctatatacaggaagtagagggtaataccatggctatatacaggaagtagagggtaacaacatggctatatacaggaagtagagggtaacaacatggctatatacaggaagtagagggtaataacatggctatatacaggaagcagcgagtaataccatggctatatacaggaagtagtggGTAATACCACGGCTATATATGGAGGGAGAAAGTAAACAAAAGAAAGAACAAGAGtacaacacacaaatacacagacagagcgacagacagacagacagacagacagacagagtggaagAAGTGGAGGAATAGAGGGAGTCCCTGTGGATTAAAGACCTGTAAACCTGAGAGCTGGTAATGGTGTCTTTTGGAGGCACAACTCTGCCATGGCTCACTGGCCAAAACCTACAGGGATTATATTTTAACAAACAACCCAAATacggtctgtggtaaacacaggtttaggagatctCATACATTCTGTTCCATGAGAAAATATTTATCAGCTAACATCCCTTATTTATGTCATCAAAACAAACACACCAAGGCTTCATTATTCATGAAGGTCGTGTTAACTGACTGATAGAATCTCATAAGAACAAAACAGCTCCTAAACCTGTGTTCATCTCAGACCTCAGTGTTAATCCCATAAAGCCGTTCGTCCCCCACATAGGAACGGCTGAACAAACCAGACAGAACTCGTTTCCAATCTTTCAGACGACAAGCTGCAGCTCCATTATAGAGGTTGGGACGGGAGATCATAGTACCACACACACCTGATATGACGGCCCCGACCCCAGCTGAAATCACCTGGATATGCCCactttataacacacacacacacacaaacacacacacctgatatgACGGCCCCGACCCCAGCTGAACTCACCTGGATATGCTCactttataacacacacacacactccaaaactgtgtgatgtcacactgtggaatttcacccagtagatatgggagtttatcaaaaatggatttgttttcaaattctttgtggatctgtgtaatctgagggaaatatgtctctctaatatggtcatacattgggcaggaggttaggaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU108102 lncRNA upstream 14715 87678988 ~ 87679262 (+) True G97719
TU108094 lncRNA upstream 36543 87656556 ~ 87657434 (+) False G97713
TU108096 lncRNA upstream 36704 87656556 ~ 87657273 (+) True G97713
TU108060 lncRNA upstream 105459 87587850 ~ 87588518 (+) True G97685
TU108054 lncRNA upstream 116133 87577330 ~ 87577844 (+) True G97681
TU108126 lncRNA downstream 7778 87708836 ~ 87709164 (+) True G97729
TU108129 lncRNA downstream 22731 87723789 ~ 87724196 (+) True G97732
TU108143 lncRNA downstream 43356 87744414 ~ 87744944 (+) True G97745
TU108154 lncRNA downstream 57960 87759018 ~ 87759391 (+) True G97754
TU108155 lncRNA downstream 59443 87760501 ~ 87760705 (+) True G97755
XM_036990029.1 mRNA upstream 32485 87648929 ~ 87661492 (+) True LOC118966730
XM_036987999.1 mRNA upstream 48940 87476504 ~ 87645037 (+) True LOC118966047
XM_036987983.1 mRNA upstream 48942 87476504 ~ 87645035 (+) False LOC118966047
XM_036987989.1 mRNA upstream 48942 87476504 ~ 87645035 (+) False LOC118966047
XM_036987993.1 mRNA upstream 48943 87476504 ~ 87645034 (+) False LOC118966047
XM_036988060.1 mRNA downstream 219910 87920968 ~ 87928366 (+) False LOC118966052
XM_036988064.1 mRNA downstream 219910 87920968 ~ 87928366 (+) False LOC118966052
XM_036988066.1 mRNA downstream 252807 87953865 ~ 88022972 (+) False LOC110517253
XM_036988069.1 mRNA downstream 253252 87954310 ~ 88021570 (+) False LOC110517253
XM_036988080.1 mRNA downstream 253286 87954344 ~ 88021570 (+) False LOC110517253
TU106748 other upstream 1198285 86492069 ~ 86495692 (+) False LOC118966033
TU106719 other upstream 1233135 86460228 ~ 86460842 (+) False G96630
TU106659 other upstream 1254505 86430202 ~ 86439472 (+) False LOC118966024
TU106660 other upstream 1254505 86430202 ~ 86439472 (+) False LOC118966024
TU106654 other upstream 1280765 86411207 ~ 86413212 (+) True G96577
TU108152 other downstream 55983 87757041 ~ 87757546 (+) True G97752
TU108449 other downstream 219949 87921007 ~ 87922414 (+) False LOC118966052
TU108569 other downstream 429980 88131038 ~ 88144441 (+) False G98104
TU108570 other downstream 429980 88131038 ~ 88144441 (+) False G98104
TU108836 other downstream 935992 88637050 ~ 88744413 (+) True LOC118966060

Expression Profile