RNA id: TU108129


Basic Information

Item Value
RNA id TU108129
length 344
lncRNA type intronic
GC content 0.37
exon number 2
gene id G97732
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 87723789 ~ 87724196 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cactatttctgatcaatttgatgttattttaaaatggacaaaaaaagtgttttctttcaaaaacggcGGTAGTGTATACACACACTGTCCCTCACTAACATATGACACACACTGACTCTCATCactaatatatacacacacactgtccctcactaacatatacacacacacacacactgtccctcactaacatacagtggggcaaaaaagtatttagtcagccaccaattgtgcaagttctcccacttaaaaagatgagagaggcctgtaattttcatcataggtacacttcaactatggcagacaaaatgagaaaaaaaatccagaaaatcacaatgtaggat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU108126 lncRNA upstream 14625 87708836 ~ 87709164 (+) True G97729
TU108117 lncRNA upstream 22731 87693977 ~ 87701058 (+) True G97723
TU108102 lncRNA upstream 44527 87678988 ~ 87679262 (+) True G97719
TU108094 lncRNA upstream 66355 87656556 ~ 87657434 (+) False G97713
TU108096 lncRNA upstream 66516 87656556 ~ 87657273 (+) True G97713
TU108143 lncRNA downstream 20218 87744414 ~ 87744944 (+) True G97745
TU108154 lncRNA downstream 34822 87759018 ~ 87759391 (+) True G97754
TU108155 lncRNA downstream 36305 87760501 ~ 87760705 (+) True G97755
TU108171 lncRNA downstream 44106 87768302 ~ 87768692 (+) True G97768
TU108159 lncRNA downstream 49697 87773893 ~ 87776471 (+) True G97758
XM_036990029.1 mRNA upstream 62297 87648929 ~ 87661492 (+) True LOC118966730
XM_036987999.1 mRNA upstream 78752 87476504 ~ 87645037 (+) True LOC118966047
XM_036987983.1 mRNA upstream 78754 87476504 ~ 87645035 (+) False LOC118966047
XM_036987989.1 mRNA upstream 78754 87476504 ~ 87645035 (+) False LOC118966047
XM_036987993.1 mRNA upstream 78755 87476504 ~ 87645034 (+) False LOC118966047
XM_036988060.1 mRNA downstream 196772 87920968 ~ 87928366 (+) False LOC118966052
XM_036988064.1 mRNA downstream 196772 87920968 ~ 87928366 (+) False LOC118966052
XM_036988066.1 mRNA downstream 229669 87953865 ~ 88022972 (+) False LOC110517253
XM_036988069.1 mRNA downstream 230114 87954310 ~ 88021570 (+) False LOC110517253
XM_036988080.1 mRNA downstream 230148 87954344 ~ 88021570 (+) False LOC110517253
TU106748 other upstream 1228097 86492069 ~ 86495692 (+) False LOC118966033
TU106719 other upstream 1262947 86460228 ~ 86460842 (+) False G96630
TU106659 other upstream 1284317 86430202 ~ 86439472 (+) False LOC118966024
TU106660 other upstream 1284317 86430202 ~ 86439472 (+) False LOC118966024
TU106654 other upstream 1310577 86411207 ~ 86413212 (+) True G96577
TU108152 other downstream 32845 87757041 ~ 87757546 (+) True G97752
TU108449 other downstream 196811 87921007 ~ 87922414 (+) False LOC118966052
TU108569 other downstream 406842 88131038 ~ 88144441 (+) False G98104
TU108570 other downstream 406842 88131038 ~ 88144441 (+) False G98104
TU108836 other downstream 912854 88637050 ~ 88744413 (+) True LOC118966060

Expression Profile