RNA id: TU108154


Basic Information

Item Value
RNA id TU108154
length 341
lncRNA type inter_gene
GC content 0.34
exon number 2
gene id G97754
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 87759018 ~ 87759391 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGTCAATaactattcagcccctttgttatggcaagtctaaatacgTTCACGAGTAAACATTGAGAGAaggctaagagtgtgcaaagctgtcatcaaggcaaacggtggctactttgaagaatctcaaatataacacatgatttgatttctttaacacttgtttggttactacatgattccatgtatgtTATTTCTGTTGGCTGGTacgtaggacacacacacaggacacacacacaggacacacaacacacacacgacacacccacaggacacacacccacaggacacacacacacaggacacacaggacacacaggacacacagggGACACACCCACAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU108143 lncRNA upstream 14074 87744414 ~ 87744944 (+) True G97745
TU108129 lncRNA upstream 34822 87723789 ~ 87724196 (+) True G97732
TU108126 lncRNA upstream 49854 87708836 ~ 87709164 (+) True G97729
TU108117 lncRNA upstream 57960 87693977 ~ 87701058 (+) True G97723
TU108102 lncRNA upstream 79756 87678988 ~ 87679262 (+) True G97719
TU108155 lncRNA downstream 1110 87760501 ~ 87760705 (+) True G97755
TU108171 lncRNA downstream 8911 87768302 ~ 87768692 (+) True G97768
TU108159 lncRNA downstream 14502 87773893 ~ 87776471 (+) True G97758
TU108160 lncRNA downstream 21281 87780672 ~ 87785002 (+) False G97759
TU108161 lncRNA downstream 21281 87780672 ~ 87785002 (+) False G97759
XM_036990029.1 mRNA upstream 97526 87648929 ~ 87661492 (+) True LOC118966730
XM_036987999.1 mRNA upstream 113981 87476504 ~ 87645037 (+) True LOC118966047
XM_036987983.1 mRNA upstream 113983 87476504 ~ 87645035 (+) False LOC118966047
XM_036987989.1 mRNA upstream 113983 87476504 ~ 87645035 (+) False LOC118966047
XM_036987993.1 mRNA upstream 113984 87476504 ~ 87645034 (+) False LOC118966047
XM_036988060.1 mRNA downstream 161577 87920968 ~ 87928366 (+) False LOC118966052
XM_036988064.1 mRNA downstream 161577 87920968 ~ 87928366 (+) False LOC118966052
XM_036988066.1 mRNA downstream 194474 87953865 ~ 88022972 (+) False LOC110517253
XM_036988069.1 mRNA downstream 194919 87954310 ~ 88021570 (+) False LOC110517253
XM_036988080.1 mRNA downstream 194953 87954344 ~ 88021570 (+) False LOC110517253
TU108152 other upstream 1472 87757041 ~ 87757546 (+) True G97752
TU106748 other upstream 1263326 86492069 ~ 86495692 (+) False LOC118966033
TU106719 other upstream 1298176 86460228 ~ 86460842 (+) False G96630
TU106659 other upstream 1319546 86430202 ~ 86439472 (+) False LOC118966024
TU106660 other upstream 1319546 86430202 ~ 86439472 (+) False LOC118966024
TU108449 other downstream 161616 87921007 ~ 87922414 (+) False LOC118966052
TU108569 other downstream 371647 88131038 ~ 88144441 (+) False G98104
TU108570 other downstream 371647 88131038 ~ 88144441 (+) False G98104
TU108836 other downstream 877659 88637050 ~ 88744413 (+) True LOC118966060
TU108810 other downstream 881622 88641013 ~ 88643451 (+) False LOC118966061

Expression Profile