RNA id: TU108171


Basic Information

Item Value
RNA id TU108171
length 391
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G97768
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 87768302 ~ 87768692 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aggaagagagaggagagaacaaaggagagagaaagagagagaagcgagaaagagaggaagagaggagagagaaagagagagaaagaggagaaaagagagagagaaagaggaaagagaaagaggagagagaaagagagagaggagagagaaagagagagaggagagagaaagagagagaggagagagaaagagagaggagagagaggagagagaaagagagagaggagaaaagagagagaggagagagaaagagagaggagagagaaagagagaagagaggaagagagaagagaggaagagagaagagaggaagagagaggagagaacaaaggagagagaaagagagagagaaagaggaaagagaaagaggagagagaaagagagagaggag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU108155 lncRNA upstream 7597 87760501 ~ 87760705 (+) True G97755
TU108154 lncRNA upstream 8911 87759018 ~ 87759391 (+) True G97754
TU108143 lncRNA upstream 23358 87744414 ~ 87744944 (+) True G97745
TU108129 lncRNA upstream 44106 87723789 ~ 87724196 (+) True G97732
TU108126 lncRNA upstream 59138 87708836 ~ 87709164 (+) True G97729
TU108159 lncRNA downstream 5201 87773893 ~ 87776471 (+) True G97758
TU108160 lncRNA downstream 11980 87780672 ~ 87785002 (+) False G97759
TU108161 lncRNA downstream 11980 87780672 ~ 87785002 (+) False G97759
TU108162 lncRNA downstream 11980 87780672 ~ 87785002 (+) True G97759
TU108192 lncRNA downstream 55891 87824583 ~ 87864025 (+) True G97786
XM_036990029.1 mRNA upstream 106810 87648929 ~ 87661492 (+) True LOC118966730
XM_036987999.1 mRNA upstream 123265 87476504 ~ 87645037 (+) True LOC118966047
XM_036987983.1 mRNA upstream 123267 87476504 ~ 87645035 (+) False LOC118966047
XM_036987989.1 mRNA upstream 123267 87476504 ~ 87645035 (+) False LOC118966047
XM_036987993.1 mRNA upstream 123268 87476504 ~ 87645034 (+) False LOC118966047
XM_036988060.1 mRNA downstream 152276 87920968 ~ 87928366 (+) False LOC118966052
XM_036988064.1 mRNA downstream 152276 87920968 ~ 87928366 (+) False LOC118966052
XM_036988066.1 mRNA downstream 185173 87953865 ~ 88022972 (+) False LOC110517253
XM_036988069.1 mRNA downstream 185618 87954310 ~ 88021570 (+) False LOC110517253
XM_036988080.1 mRNA downstream 185652 87954344 ~ 88021570 (+) False LOC110517253
TU108152 other upstream 10756 87757041 ~ 87757546 (+) True G97752
TU106748 other upstream 1272610 86492069 ~ 86495692 (+) False LOC118966033
TU106719 other upstream 1307460 86460228 ~ 86460842 (+) False G96630
TU106659 other upstream 1328830 86430202 ~ 86439472 (+) False LOC118966024
TU108449 other downstream 152315 87921007 ~ 87922414 (+) False LOC118966052
TU108569 other downstream 362346 88131038 ~ 88144441 (+) False G98104
TU108570 other downstream 362346 88131038 ~ 88144441 (+) False G98104
TU108836 other downstream 868358 88637050 ~ 88744413 (+) True LOC118966060
TU108810 other downstream 872321 88641013 ~ 88643451 (+) False LOC118966061

Expression Profile