RNA id: TU108354


Basic Information

Item Value
RNA id TU108354
length 944
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G97926
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 87771737 ~ 87772680 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CATCTGAGAAATCCTTTGGTTGTTCCCAAAACAGGTGGCAAGTTGATATGTCCCTAACATCCACATCAATACCATCTCACCCTGTTCCATCTAGATGATATGTCCCTAACATCAATACCATCTCACCCTGTTCCATCTAGATGATATGTCCCTAACATCCACATCAATACCATCTCACCCTGTTCCATCTAGATGATATGTCCCTAACATCCACATCAATACCATCTCACCCTGTTCCATCTAGATGATATGTCCCTAACATCCACATCAATACCATCTCACCCTGTTCCATCTAGATGATATGTCCCTAACATCAATACCATCTCACCCTGTTCCATCTAGATGATATGTCCCTAACATCAATACCATCTCACCCTGTTCCATCTAGATGATATGTCCCTGACATCCACATCAATACCATCTCACCCTGTTTCATCTAGATGATATGTCCCTAACATCCACATCAATACCATCTCACCCTGTTCCATCTAGATGATATGTCCCTAACATCAATACCATCTCACCCTGTTCCATCTAGATGATGTCACTTTGATGGCAACATGATGTCAGCATATAACATTACCACATAACAACAGGGTGATGAGAGTTCTTTGAGAGTAGAGCTGCAGTTACCTTCCCTGGCAATGACTCTCACACACATATAAGTCCTTCATACACCTTCCTAACACCGTAGTTtaagaaaatacacacacacctcgtcATCAGCCTCACCCTCATCACATCATtttgggaggagggaggtggttgCCACGACGACCGTCTCTGAGGACACTGCTAATTCACCCTGGTTCAGATGATCGAGCCCCAGAGCGCTCTCTTCTTGCTCTCTCCCTGGAATGTCTAAACAGCTGGAGGATGAGATAAGAAGTGAATAAGCAACATGGATAAAGTATGTCGGAGAGGcaaaaacaaagaaaataaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU108409 lncRNA downstream 2497 87768776 ~ 87769240 (-) True G97975
TU108408 lncRNA downstream 3089 87768302 ~ 87768648 (-) True G97974
TU108407 lncRNA downstream 3637 87767795 ~ 87768100 (-) True G97973
TU108396 lncRNA downstream 14368 87757030 ~ 87757369 (-) True G97966
TU108395 lncRNA downstream 14882 87756649 ~ 87756855 (-) True G97965
TU108353 lncRNA upstream 5319 87777999 ~ 87781555 (-) True LOC110508309
TU108416 lncRNA upstream 32255 87804935 ~ 87805540 (-) True G97982
TU108447 lncRNA upstream 95819 87868499 ~ 87868958 (-) True G98008
TU108916 lncRNA upstream 97623 87870303 ~ 87870581 (-) True G98353
TU108918 lncRNA upstream 101366 87874046 ~ 87874298 (-) True G98355
XM_036988005.1 mRNA downstream 25648 87664667 ~ 87746089 (-) False LOC118966049
XM_036987964.1 mRNA downstream 489498 87260566 ~ 87282239 (-) False LOC118966042
XR_005053247.1 mRNA downstream 529330 87232925 ~ 87242407 (-) True LOC118966045
XM_036990028.1 mRNA downstream 541658 87207464 ~ 87230079 (-) True LOC118966729
XM_036990021.1 mRNA downstream 566852 87167885 ~ 87204885 (-) True LOC118966728
XM_036988016.1 mRNA upstream 1132 87773812 ~ 87825477 (-) False LOC110508309
XM_036988023.1 mRNA upstream 1132 87773812 ~ 87825477 (-) False LOC110508309
XM_036988027.1 mRNA upstream 1132 87773812 ~ 87825477 (-) False LOC110508309
XM_036988030.1 mRNA upstream 1132 87773812 ~ 87825477 (-) False LOC110508309
XM_036988035.1 mRNA upstream 1132 87773812 ~ 87825477 (-) False LOC110508309
TU107871 other downstream 476738 87294357 ~ 87294999 (-) True G97535
TU107596 other downstream 983685 86787057 ~ 86788052 (-) True G97308
TU107498 other downstream 1148426 86566477 ~ 86623311 (-) True G97251
TU107372 other downstream 1378648 86392561 ~ 86393089 (-) True G97176
TU107204 other downstream 1620398 86146009 ~ 86151339 (-) False G97047
TU108928 other upstream 140622 87913302 ~ 87915900 (-) False LOC110531505
TU109033 other upstream 290782 88063462 ~ 88064854 (-) False pex13
TU109035 other upstream 290782 88063462 ~ 88064914 (-) True pex13
TU109129 other upstream 446149 88218829 ~ 88220804 (-) False G98510
TU109132 other upstream 446149 88218829 ~ 88220804 (-) False G98510

Expression Profile