RNA id: TU108926


Basic Information

Item Value
RNA id TU108926
length 794
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G98362
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 87888333 ~ 87889126 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCTTACACCATCTAcagccactgtgattattatctgaccctgctggtcatctatgaacgttttaacatcttgaagaacgatctggccttaatgaccGTTTAGTCTTATAAtctccggcacagccagaagaggactggccacccctcacagcctggttcctctctacccagtacagccagaagaggactggccacccctcagagcctggttcctctctacccagtacagccagaagaggactggtcacccctcagagcctggttcctctctacccagtacagccagaagaggactggtcacccctcagagcctggttcctctctacccagtacagccaggagaggactggccacccctcagagcctggttcctctctacccagtacagccaggagaggactggccacccctcagagcctggttcctctctacccagtacagccagaagaagactggccacccctcagagcctggttccactctacccagtacagccagaagaggactggtcacctctcagagcctggttcccccctaatttttttaattacatttttattgaacaaggcaagtcagttaagaacaaattcttgttcgcaatgacggccttcccctggccaaaccctaacccggacgacgctgggccaatagtGCACCGCcatataggactcccaatcagggccggttgtgatacagcctggaattgaaccggGGTTTGTAGTGAGATACAgtaccttagactgctgcgccactcgggagcccagtaacccatgtttgtttgttataTCCAGCCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU108923 lncRNA downstream 2208 87884334 ~ 87886125 (-) True G98359
TU108918 lncRNA downstream 14035 87874046 ~ 87874298 (-) True G98355
TU108916 lncRNA downstream 17752 87870303 ~ 87870581 (-) True G98353
TU108447 lncRNA downstream 19375 87868499 ~ 87868958 (-) True G98008
TU108416 lncRNA downstream 82793 87804935 ~ 87805540 (-) True G97982
TU108937 lncRNA upstream 8128 87897254 ~ 87897560 (-) True G98371
TU108939 lncRNA upstream 11350 87900476 ~ 87900802 (-) True G98373
TU108941 lncRNA upstream 13025 87902151 ~ 87902550 (-) True G98375
TU108942 lncRNA upstream 13437 87902563 ~ 87903426 (-) True G98376
TU108943 lncRNA upstream 14626 87903752 ~ 87904046 (-) True G98377
XM_036988023.1 mRNA downstream 62856 87773812 ~ 87825477 (-) False LOC110508309
XM_036988046.1 mRNA upstream 21927 87911053 ~ 87919678 (-) False LOC110531505
XM_036988049.1 mRNA upstream 21927 87911053 ~ 87919678 (-) False LOC110531505
XM_036988054.1 mRNA upstream 21927 87911053 ~ 87919678 (-) False LOC110531505
XM_036988057.1 mRNA upstream 21927 87911053 ~ 87919678 (-) False LOC110531505
XM_036988119.1 mRNA upstream 140402 88029528 ~ 88047443 (-) False LOC110531618
TU107871 other downstream 593334 87294357 ~ 87294999 (-) True G97535
TU107596 other downstream 1100281 86787057 ~ 86788052 (-) True G97308
TU107498 other downstream 1265022 86566477 ~ 86623311 (-) True G97251
TU107372 other downstream 1495244 86392561 ~ 86393089 (-) True G97176
TU107204 other downstream 1736994 86146009 ~ 86151339 (-) False G97047
TU108928 other upstream 24176 87913302 ~ 87915900 (-) False LOC110531505
TU109033 other upstream 174336 88063462 ~ 88064854 (-) False pex13
TU109035 other upstream 174336 88063462 ~ 88064914 (-) True pex13
TU109129 other upstream 329703 88218829 ~ 88220804 (-) False G98510
TU109132 other upstream 329703 88218829 ~ 88220804 (-) False G98510

Expression Profile