RNA id: TU108942


Basic Information

Item Value
RNA id TU108942
length 864
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G98376
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 87902563 ~ 87903426 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tcgcaacatgaaacaattttactgagttacagttcatataaggaaatcagtcaatttaaataaattcactaggccgtaatctatggatttcacatgactgggtatacagatatgcatcagatacacagatacctttaaaaaaaggtaggtgcgtggatcagaaaaccagtcagcatctggtgtgaccatcgtttgcctcatgcagcgcgacacatctccttcacatagagttgatcaggctgttgactgtggcctgtagaatgttgtcccgctcctcttcaaaagctgtgcgaagttgctggatatttgcgGGAAACCGTAACACGCTgccgtacacgtcgatccagagcatcccaaacatgctcaatgggtgacatgttcgGTGAGTATtaaggccatggaagaactggtgcattttatgtacagatccttgagacatggggccgtggtggacattcctgcagtcagcatgccaattacatgcTCCTTCaaaaacttaagacatctgtggcattgtgttgtgtgacaaaactgtacattttatagtggccttttattgtccccagcacaaggtgcacctgtggaatgatcatactgtttaatcagcttcttgatatgccacacttgtcatgtggatggattatcttggcaaagaaaacatgctcactaacaaggatgtaaacaaatgtgaacAAAACATTTTGAGAGAAGTAAAGCTTCTcatgcgtatggaacatttctggtatcttttatttcagctcatgaaacagtgACAGTATCAcgagcaaagcatccccacaccatcacaactcctcctccatgcttcacggtgggaaccacacatgcggagatcacccgttcccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU108941 lncRNA downstream 13 87902151 ~ 87902550 (-) True G98375
TU108939 lncRNA downstream 1761 87900476 ~ 87900802 (-) True G98373
TU108937 lncRNA downstream 5003 87897254 ~ 87897560 (-) True G98371
TU108926 lncRNA downstream 13437 87888333 ~ 87889126 (-) True G98362
TU108923 lncRNA downstream 16438 87884334 ~ 87886125 (-) True G98359
TU108943 lncRNA upstream 326 87903752 ~ 87904046 (-) True G98377
TU108929 lncRNA upstream 8027 87911453 ~ 87912364 (-) False LOC110531505
TU108932 lncRNA upstream 15323 87918749 ~ 87919056 (-) True LOC110531505
TU108952 lncRNA upstream 22302 87925728 ~ 87926944 (-) False G98386
TU108953 lncRNA upstream 22302 87925728 ~ 87926643 (-) True G98386
XM_036988023.1 mRNA downstream 77086 87773812 ~ 87825477 (-) False LOC110508309
XM_036988046.1 mRNA upstream 7627 87911053 ~ 87919678 (-) False LOC110531505
XM_036988049.1 mRNA upstream 7627 87911053 ~ 87919678 (-) False LOC110531505
XM_036988054.1 mRNA upstream 7627 87911053 ~ 87919678 (-) False LOC110531505
XM_036988057.1 mRNA upstream 7627 87911053 ~ 87919678 (-) False LOC110531505
XM_036988119.1 mRNA upstream 126102 88029528 ~ 88047443 (-) False LOC110531618
TU107871 other downstream 607564 87294357 ~ 87294999 (-) True G97535
TU107596 other downstream 1114511 86787057 ~ 86788052 (-) True G97308
TU107498 other downstream 1279252 86566477 ~ 86623311 (-) True G97251
TU107372 other downstream 1509474 86392561 ~ 86393089 (-) True G97176
TU107204 other downstream 1751224 86146009 ~ 86151339 (-) False G97047
TU108928 other upstream 9876 87913302 ~ 87915900 (-) False LOC110531505
TU109033 other upstream 160036 88063462 ~ 88064854 (-) False pex13
TU109035 other upstream 160036 88063462 ~ 88064914 (-) True pex13
TU109129 other upstream 315403 88218829 ~ 88220804 (-) False G98510
TU109132 other upstream 315403 88218829 ~ 88220804 (-) False G98510

Expression Profile