RNA id: TU108956


Basic Information

Item Value
RNA id TU108956
length 1790
lncRNA type antisense_over
GC content 0.41
exon number 1
gene id G98387
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 87927334 ~ 87929123 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGCATTAAATCTGATATTGGAATCGCTATAACACATTAGAGAAAGGAATGCATCCTGCCCAATTCAATCCATAAAAGTGGAAATGTACAACAAAGCAGAAGATTTCACAATGATAATCATTCAATAGTAACATTAATACAGGAAAATACAGTAGTTTGATCTGAAAATAGATTGAGTTTATGTAACATGTCCTTAGGGGTATCAGGTAGCCTCGCGTTAGAGAGACAGGCCTGGAACCAACATGTCGCTGGTCTCAATTAGGTCCACTATTGCTCTAAATGATTAACACAGCTGTTCACACAAAGGttcattttggagaaatgtaaatAGAGCACTAATTTCACCTTTACAAAAATAAAGAAAGGATGTCACCCAGTGTACTCTCTATCGCCCCCTATCTTCGataaacacagatattaaaactGTCTACTAAAATTGTCATCCCATCTCAAGACTTACGTATCCAAATTGGTCCACAAGGACCGAAGCgggtttataaaaaaatatatatatatatttatcctcGGATTAGATCCGTCGACTATTCCATATCTTCGATGCTTCATCAGAATCAACAGGTCCTTGGGCTGTATCATCTCTCCATACAGAAAAAGCTTTTACTCAACTAGAATGGCTAGATCTCTGGTCGGTCTTGAAAAATGGCTCTAATTTAATTAATATGCCAATCCCCTCAGCCATAGTTATAACAGGCAATATCTGCTCTGTTCAGAATCACTAGAAGAAGCAGACTAGGCGATCAatttctcctttgttattttaTTATCCATGGGAACCCCCTGGCCCAGGCCATTCatcaatcaaataaaataacaccAATACGCAGACGATATTGTACTATATCTAGACAATGTATCTCTATTGCTCCCAAATGCATTGAAGATCATAGATAAAAATTCAGTTTAATCTCAAATTACAAAAAATGCATCGAAACCAAATAAGCCCTACTGCCTCTCAAGATCCCGATGGAGGACTCCGTCTCTACTTacagttatagatctgtcactctCACTGAAAGCAAGTCTAGGAAgccggtagatctgttctatgtgccctatttctatgcttcccgttcttaagtttcgtacaccagcttcaaaacagacgaaaaaaatacaatatttttgtttatggaaaatatatttcacagcggtttagacggACCATGATCCTCTACACTATACTGgctggttttgtcacaaactgaaattaggtttACTGTTAGAATTTtaccaaccaggaaatggcgaagTTAATTTCTTCTTCAATGTTTTTAGTGGCAACCCACAGGTACAATGTGTGAACTAATGAATATAAAATATAGGAACAGAATATGAATTTAAATATTGGTACCTgtaacccccccaccaccacacacaaagttgctggttcaaatccctggcTGGTTCGAAGTCTGACTGGGAAACGCAATGGCTAAGGTGTTGCGTTGACAGTCTCTGGACCTGATTTGAAGTACCCGTCAGGGCCGCGGTCTCCCAAGTTTGCTGCAGTACTCTGTCTCTGTTTGATTCTAGTTGCATAGAACTTAATGCCCGACCAGTTTCTGCTTTTGAGCGCCACAGGTTCTGACTGGAGGCATTTGAGGCAGTCCTTCTTTCCAGGAACTTGGCCACTCTTTATGAACGGCATCATGCGTTTCTCTACTGCTGCTACCTCATCAACGATCCACTTTAATCTCACAATGTTGCTTTGGGTTGGCTGGGCGCCGGCTCAGCTGGGAGACAGGCCGGATGGGCGCCTGTGCGACGGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU108952 lncRNA downstream 390 87925728 ~ 87926944 (-) False G98386
TU108953 lncRNA downstream 691 87925728 ~ 87926643 (-) True G98386
TU108932 lncRNA downstream 8278 87918749 ~ 87919056 (-) True LOC110531505
TU108929 lncRNA downstream 14970 87911453 ~ 87912364 (-) False LOC110531505
TU108943 lncRNA downstream 23288 87903752 ~ 87904046 (-) True G98377
TU108959 lncRNA upstream 691 87929814 ~ 87930626 (-) True G98388
TU108960 lncRNA upstream 1968 87931091 ~ 87931806 (-) True G98389
TU108964 lncRNA upstream 16769 87945892 ~ 87946606 (-) True G98393
TU108973 lncRNA upstream 27522 87956645 ~ 88022962 (-) True G98401
TU108999 lncRNA upstream 50538 87979661 ~ 87979948 (-) True G98421
XM_036988046.1 mRNA downstream 7656 87911053 ~ 87919678 (-) False LOC110531505
XM_036988049.1 mRNA downstream 7656 87911053 ~ 87919678 (-) False LOC110531505
XM_036988054.1 mRNA downstream 7656 87911053 ~ 87919678 (-) False LOC110531505
XM_036988057.1 mRNA downstream 7656 87911053 ~ 87919678 (-) False LOC110531505
XM_036988037.1 mRNA downstream 101857 87773812 ~ 87825477 (-) False LOC110508309
XM_036988119.1 mRNA upstream 100405 88029528 ~ 88047443 (-) False LOC110531618
XM_036988116.1 mRNA upstream 100405 88029528 ~ 88047874 (-) False LOC110531618
XM_036988094.1 mRNA upstream 100405 88029528 ~ 88053882 (-) False LOC110531618
XM_036988084.1 mRNA upstream 100405 88029528 ~ 88053883 (-) False LOC110531618
XM_036988100.1 mRNA upstream 100405 88029528 ~ 88053884 (-) False LOC110531618
TU108928 other downstream 11434 87913302 ~ 87915900 (-) False LOC110531505
TU107871 other downstream 632335 87294357 ~ 87294999 (-) True G97535
TU107596 other downstream 1139282 86787057 ~ 86788052 (-) True G97308
TU107498 other downstream 1304023 86566477 ~ 86623311 (-) True G97251
TU107372 other downstream 1534245 86392561 ~ 86393089 (-) True G97176
TU109033 other upstream 134339 88063462 ~ 88064854 (-) False pex13
TU109035 other upstream 134339 88063462 ~ 88064914 (-) True pex13
TU109129 other upstream 289706 88218829 ~ 88220804 (-) False G98510
TU109132 other upstream 289706 88218829 ~ 88220804 (-) False G98510
TU109139 other upstream 289706 88218829 ~ 88220804 (-) False G98510

Expression Profile