RNA id: TU108964


Basic Information

Item Value
RNA id TU108964
length 715
lncRNA type inter_gene
GC content 0.58
exon number 1
gene id G98393
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 87945892 ~ 87946606 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gggtagcctagtggttagagtgtagggacggcagggtagcctagtggttagagtgtagggacggcagggtagcctagtggttagagtgtagggacgttagggtggcctagtggttagagtgcagtgtagcctagtggttagagtgtagggacggcaggtagcctagtggttagagtgtaggggcggcaaggtagcctagtggttagagtgtagagacggcagggtagcctagtggttagagtgtagggacggcagggtagcctagtggttagagtgtagggatggcagggtagcctagtggttagagtgtaggacggcagggtggcctagtggttagagtgtagggacgacagggtggcctagtggttagagtgtagggacggcagggtagcctagtggttagagtgtagagatggcagggtagcctagtggttagagtgtagggacggcagggtagcctagtggttagagtgtagggacggcagggtagcctagtggttagtgtaggggcggcagggtggcctagtggttagagtgtagggacggcagggtggcctagtggttagagtgtagggacggcagggtggcctagtggttagagtgtagggacggcagggtggcctagtggttagagtgtagggacggcagggtggcctagtggttagagtgtagggacggcagggtggcctagtggttagagtgtagggacggcagg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU108960 lncRNA downstream 14086 87931091 ~ 87931806 (-) True G98389
TU108959 lncRNA downstream 15266 87929814 ~ 87930626 (-) True G98388
TU108956 lncRNA downstream 16769 87927334 ~ 87929123 (-) False G98387
TU108958 lncRNA downstream 17259 87927334 ~ 87928633 (-) True G98387
TU108957 lncRNA downstream 17354 87927334 ~ 87928538 (-) False G98387
TU108973 lncRNA upstream 10039 87956645 ~ 88022962 (-) True G98401
TU108999 lncRNA upstream 33055 87979661 ~ 87979948 (-) True G98421
TU109002 lncRNA upstream 35045 87981651 ~ 87983430 (-) True G98424
TU109005 lncRNA upstream 45213 87991819 ~ 87992160 (-) True G98427
TU109026 lncRNA upstream 72302 88018908 ~ 88019291 (-) True G98444
XM_036988046.1 mRNA downstream 26214 87911053 ~ 87919678 (-) False LOC110531505
XM_036988049.1 mRNA downstream 26214 87911053 ~ 87919678 (-) False LOC110531505
XM_036988054.1 mRNA downstream 26214 87911053 ~ 87919678 (-) False LOC110531505
XM_036988057.1 mRNA downstream 26214 87911053 ~ 87919678 (-) False LOC110531505
XM_036988037.1 mRNA downstream 120415 87773812 ~ 87825477 (-) False LOC110508309
XM_036988119.1 mRNA upstream 82922 88029528 ~ 88047443 (-) False LOC110531618
XM_036988116.1 mRNA upstream 82922 88029528 ~ 88047874 (-) False LOC110531618
XM_036988094.1 mRNA upstream 82922 88029528 ~ 88053882 (-) False LOC110531618
XM_036988084.1 mRNA upstream 82922 88029528 ~ 88053883 (-) False LOC110531618
XM_036988100.1 mRNA upstream 82922 88029528 ~ 88053884 (-) False LOC110531618
TU108928 other downstream 29992 87913302 ~ 87915900 (-) False LOC110531505
TU107871 other downstream 650893 87294357 ~ 87294999 (-) True G97535
TU107596 other downstream 1157840 86787057 ~ 86788052 (-) True G97308
TU107498 other downstream 1322581 86566477 ~ 86623311 (-) True G97251
TU107372 other downstream 1552803 86392561 ~ 86393089 (-) True G97176
TU109033 other upstream 116856 88063462 ~ 88064854 (-) False pex13
TU109035 other upstream 116856 88063462 ~ 88064914 (-) True pex13
TU109129 other upstream 272223 88218829 ~ 88220804 (-) False G98510
TU109132 other upstream 272223 88218829 ~ 88220804 (-) False G98510
TU109139 other upstream 272223 88218829 ~ 88220804 (-) False G98510

Expression Profile