RNA id: TU108971


Basic Information

Item Value
RNA id TU108971
length 555
lncRNA type antisense_over
GC content 0.53
exon number 4
gene id G98399
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 88021032 ~ 88021807 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAACGGGCCACGGGGTGACGCTGTACGTCGTCATTTACATATTGACATGGTTTTTGGTGGACAGAACAGCTGATGGATGAGGACGGGCGTGTCTGCTCTCTCCGTTCCTCAGCAACGTGACCTGGGGCCTCCCACCTCTCTTCGTTCCTTCTGTTCGGGTTAgttttgtgtgtttgttggtaTGCCTGTATGTACAGTAACAGCAGTTTGGTTCATGTGGCGCAGTGGCTGGATGTCTCAATCACACATCTCCTCGGGTATTTCGTGTGGGTTGAGGATACCGGGAACTGACATCTGCAGCTTGTGTTTCTCCTCCTGCGCCTGACGCAGCGACGCCTCCCGCTCCTCTAGGAACAGGTCTGTGGTGTCCTCCCCTGCAAACtcctacaggaggagagagagagacattaccacacatacagacagacagcaacagGTCTGTGGTGTCCTCCCCTGAAAACtcctacaggaggagagagagagacattatcacacagacagacagacagcaacagGTCTGTGGTGGCCTCtcctacaggaggagagagagacatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU109026 lncRNA downstream 1741 88018908 ~ 88019291 (-) True G98444
TU109005 lncRNA downstream 28872 87991819 ~ 87992160 (-) True G98427
TU109002 lncRNA downstream 37602 87981651 ~ 87983430 (-) True G98424
TU108999 lncRNA downstream 41084 87979661 ~ 87979948 (-) True G98421
TU108964 lncRNA downstream 74426 87945892 ~ 87946606 (-) True G98393
TU109027 lncRNA upstream 5240 88027047 ~ 88027665 (-) True G98445
TU109063 lncRNA upstream 79666 88101473 ~ 88102253 (-) True G98473
TU109071 lncRNA upstream 89859 88111666 ~ 88113966 (-) False G98478
TU109072 lncRNA upstream 91872 88113679 ~ 88114282 (-) True G98478
TU109088 lncRNA upstream 144030 88165837 ~ 88167312 (-) False G98488
XM_036988046.1 mRNA downstream 101354 87911053 ~ 87919678 (-) False LOC110531505
XM_036988049.1 mRNA downstream 101354 87911053 ~ 87919678 (-) False LOC110531505
XM_036988054.1 mRNA downstream 101354 87911053 ~ 87919678 (-) False LOC110531505
XM_036988057.1 mRNA downstream 101354 87911053 ~ 87919678 (-) False LOC110531505
XM_036988037.1 mRNA downstream 195555 87773812 ~ 87825477 (-) False LOC110508309
XM_036988119.1 mRNA upstream 7721 88029528 ~ 88047443 (-) False LOC110531618
XM_036988116.1 mRNA upstream 7721 88029528 ~ 88047874 (-) False LOC110531618
XM_036988094.1 mRNA upstream 7721 88029528 ~ 88053882 (-) False LOC110531618
XM_036988084.1 mRNA upstream 7721 88029528 ~ 88053883 (-) False LOC110531618
XM_036988100.1 mRNA upstream 7721 88029528 ~ 88053884 (-) False LOC110531618
TU108928 other downstream 105132 87913302 ~ 87915900 (-) False LOC110531505
TU107871 other downstream 726033 87294357 ~ 87294999 (-) True G97535
TU107596 other downstream 1232980 86787057 ~ 86788052 (-) True G97308
TU107498 other downstream 1397721 86566477 ~ 86623311 (-) True G97251
TU107372 other downstream 1627943 86392561 ~ 86393089 (-) True G97176
TU109033 other upstream 41655 88063462 ~ 88064854 (-) False pex13
TU109035 other upstream 41655 88063462 ~ 88064914 (-) True pex13
TU109129 other upstream 197022 88218829 ~ 88220804 (-) False G98510
TU109132 other upstream 197022 88218829 ~ 88220804 (-) False G98510
TU109139 other upstream 197022 88218829 ~ 88220804 (-) False G98510

Expression Profile