RNA id: TU109132


Basic Information

Item Value
RNA id TU109132
length 487
RNA type TUCP
GC content 0.34
exon number 4
gene id G98510
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 88218829 ~ 88220804 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTTCTTATGAAAGAAAAGCAATATCATGAAGGAATATTCCACCCACTCTCTGGAAGCTGCTCAGCACTTCCTGGTTCCTCTGAAGCTCCACCGACATTAACATATAGAGACCAATCCAGTTCTGTTACTTATCAGCTGCTCAGAGTCGTGTGGTGGTATATTCTGTTACTCATCAGCTGCTCAGAGTCGCGTGGTGGTATATTCTGTTACTCATCAGCTGCTCAGAGTGGTGTGGTGGTATATTCTGTTACTCATCAGCTGCTCAGAGTCGTGTGGTGTGGTGGTATATTCTGTTACTCATCAGCTGCTCAGAGTcgtgtggtgtggtggtatatTCTGTTACTCATCAGCTGCTCAGAGTCGTGTGGTGGTATATTCTGTTACTCATCAGCTGCTCAGAGTcgtgtggtgtggtggtatatTCTCAGAGTCGTGTGGTGTGGGGGTATATTCTCAGAGTCGTGTGGGGGTATATTCTGTGGGGGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU109103 lncRNA downstream 6628 88210961 ~ 88212201 (-) True G98502
TU109101 lncRNA downstream 14220 88204290 ~ 88204609 (-) True G98501
TU109099 lncRNA downstream 20898 88197610 ~ 88197931 (-) True G98499
TU109088 lncRNA downstream 51517 88165837 ~ 88167312 (-) False G98488
TU109107 lncRNA upstream 2527 88223331 ~ 88224581 (-) False G98505
TU109108 lncRNA upstream 2527 88223331 ~ 88224678 (-) False G98505
TU109109 lncRNA upstream 2527 88223331 ~ 88224581 (-) False G98505
TU109110 lncRNA upstream 2527 88223331 ~ 88224581 (-) False G98505
TU109111 lncRNA upstream 2527 88223331 ~ 88224581 (-) False G98505
XM_036988142.1 mRNA downstream 16671 88178952 ~ 88202158 (-) False papolg
XR_005053261.1 mRNA downstream 16671 88178952 ~ 88202158 (-) False papolg
XR_005053262.1 mRNA downstream 16671 88178952 ~ 88202158 (-) True papolg
LOC118966733 mRNA downstream 54218 88159117 ~ 88164611 (-) True LOC118966733
XM_036988136.1 mRNA downstream 74363 88131038 ~ 88144466 (-) True LOC100499622
XR_005053264.1 mRNA upstream 7084 88227888 ~ 88230342 (-) False LOC118966057
XR_005053265.1 mRNA upstream 11137 88231941 ~ 88234270 (-) False LOC118966058
XM_036988180.1 mRNA upstream 15777 88236581 ~ 88270978 (-) False LOC118936686
XM_036988175.1 mRNA upstream 15777 88236581 ~ 88270980 (-) True LOC118936686
XR_005053271.1 mRNA upstream 494069 88714873 ~ 88715334 (-) False LOC118966063
TU109035 other downstream 153915 88063462 ~ 88064914 (-) True pex13
TU109033 other downstream 153975 88063462 ~ 88064854 (-) False pex13
TU108928 other downstream 302929 87913302 ~ 87915900 (-) False LOC110531505
TU107871 other downstream 923830 87294357 ~ 87294999 (-) True G97535
TU107596 other downstream 1430777 86787057 ~ 86788052 (-) True G97308
TU109183 other upstream 93472 88314276 ~ 88314696 (-) True G98549
TU109256 other upstream 331170 88551974 ~ 88644067 (-) True G98616
TU109341 other upstream 556735 88777539 ~ 88782029 (-) False LOC118966065
TU109340 other upstream 557100 88777904 ~ 88782029 (-) True LOC118966065
TU109555 other upstream 855043 89075847 ~ 89076238 (-) True G98878

Expression Profile