RNA id: TU109237


Basic Information

Item Value
RNA id TU109237
length 390
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G98598
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 88504780 ~ 88505169 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGATAATGGTGTCATTGACTAGGATATCAATTCCTATATATTGGCCTGAATATTGACTTTTCCTTCTAGGTTATGGAAATAAAGTTTCGGTGTTGAATTTTATAATCTGGTAGATATATGTTATAAAATTGTTTAATTATTTGAACAATTTCAACCTCTTATTGTATTATTTCTTCTGTCCGAGTTCCATCCTTGTTGACAAAACAAGATGTTGACAAATAGTATCTTGTCCTCAATATCGTCatagactacagtaatacaccttctgactagactacagtaatacaccttctgactagactacagtaatacaccttctgactagactacagtaatacaccttctgactagactacagtaatacaccttctgactagactacagtaatac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU109235 lncRNA downstream 1476 88502860 ~ 88503304 (-) True G98596
TU109233 lncRNA downstream 16852 88487678 ~ 88487928 (-) True G98594
TU109218 lncRNA downstream 49989 88453272 ~ 88454791 (-) True G98581
TU109215 lncRNA downstream 51534 88453030 ~ 88453246 (-) True G98580
TU109206 lncRNA downstream 93495 88411078 ~ 88411285 (-) True G98571
TU109238 lncRNA upstream 64 88505233 ~ 88505715 (-) True G98599
TU109240 lncRNA upstream 9345 88514514 ~ 88514843 (-) True G98601
TU109283 lncRNA upstream 122770 88627939 ~ 88628771 (-) False G98642
TU109284 lncRNA upstream 122770 88627939 ~ 88631032 (-) True G98642
TU109249 lncRNA upstream 133172 88638341 ~ 88643435 (-) True G98610
XM_036988175.1 mRNA downstream 233800 88236581 ~ 88270980 (-) True LOC118936686
XM_036988180.1 mRNA downstream 233802 88236581 ~ 88270978 (-) False LOC118936686
XR_005053265.1 mRNA downstream 270510 88231941 ~ 88234270 (-) False LOC118966058
XR_005053264.1 mRNA downstream 274438 88227888 ~ 88230342 (-) False LOC118966057
XR_005053262.1 mRNA downstream 302622 88178952 ~ 88202158 (-) True papolg
XR_005053271.1 mRNA upstream 209704 88714873 ~ 88715334 (-) False LOC118966063
XR_005053270.1 mRNA upstream 209704 88714873 ~ 88715755 (-) False LOC118966063
XR_005053272.1 mRNA upstream 211149 88716318 ~ 88717077 (-) True LOC118966064
XR_005053273.1 mRNA upstream 273148 88778317 ~ 88782119 (-) False LOC118966065
XM_036979551.1 mRNA upstream 717981 89223150 ~ 89270341 (-) False ghitm
TU109183 other downstream 190084 88314276 ~ 88314696 (-) True G98549
TU109139 other downstream 283976 88218829 ~ 88220804 (-) False G98510
TU109256 other upstream 46805 88551974 ~ 88644067 (-) True G98616
TU109341 other upstream 272370 88777539 ~ 88782029 (-) False LOC118966065
TU109340 other upstream 272735 88777904 ~ 88782029 (-) True LOC118966065
TU109555 other upstream 570678 89075847 ~ 89076238 (-) True G98878
TU109710 other upstream 717981 89223150 ~ 89252088 (-) True ghitm

Expression Profile