RNA id: TU109291


Basic Information

Item Value
RNA id TU109291
length 1223
lncRNA type intronic
GC content 0.46
exon number 3
gene id G98646
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 88696267 ~ 88697751 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

caggtaaaggttagggctagggttaggattagggattagggttaggattagggattagggttagggttcaggtaaaggttaggtttagggttaggattagggaacAAGGTTACGGTTTGCTTTAGGGTTTGGGTTCAGgtaaaggttaggtttaggattagggatTAGGGAAAATGGGATTTTGTATGGAAATCAACTTTAGGTTGCCACAAGGAGAGTAAAACATCTGCTAAGTGTGTGTGGTTCCCCCGACAGCAGCAGCTCCAGTCTGTAAAAACAGCTTTAGGGGGATATTCACAGCTCTGTTAATGGAGAACTGGCTTTTAAAGAGGGAACACGgggggtggagtgtgtgtgtgtatgtgtgtgtgtgtgtgtgtgtttgtgtgtgtgtgtgtgcgtgcctgtgtctgtgtgtgtgtctgtgtgtgtgtgtgtgcgtgtctgtgtctgtgcgtgtgcgtgcgtatctgtgcgtgtgtacgtgtgtgtctgtgcatgtgcaggtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgcgtgcgtgtggtgtgtgtgtgtgtggtatgtgtgtgtatgcaggtgtgtgagtgtgtgtgtgtgtttgtgtgtctgtgcatgtgtgtgtgtgtgtgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgatttaacaTCTGGTTCAGGTGGATTAAGTGACTCCATGGCCAGTCTTATCCTAAAGCTCTTTTACATGTCACACTGTTCCCCATCTGCAGCACTGGGCTTAGCTGATCCACCTGATGTTGctgggagctgtgtgtgtgtatgacatgGTGTCTGGTGTTACCGTAGTAACTTGGGCACAGCGGTACAGTTTCCTCCAGTCAAGAATCTGATGAACATGCTAGTAGCTCTGTAACTAATAGAAGATAGTGAATAGTAttgttgacagggctgtataaAGGTGGAACAGTGAATAGTGttgttgacagggctgtataaAGGTGGAACAGTGAATAGTATTGCTGACAGGGCTGTATAAAGGTGGAACAGTGAATAGTATTGCTGACAGGGCTGTATAAAGGTGGAACAGTGAATAGTAttgttgacagggctgtataaAGGTGGAACAGTGAATAGTAttgttgacagggctgtataaAGGTGGAACAGTGAATAGTAttgttgac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU109303 lncRNA downstream 20898 88675033 ~ 88675369 (-) True G98656
TU109286 lncRNA downstream 44850 88650675 ~ 88651417 (-) True G98644
TU109285 lncRNA downstream 46501 88646841 ~ 88649766 (-) True G98643
TU109249 lncRNA downstream 52832 88638341 ~ 88643435 (-) True G98610
TU109284 lncRNA downstream 65235 88627939 ~ 88631032 (-) True G98642
TU109322 lncRNA upstream 11230 88708981 ~ 88711103 (-) True G98675
TU109324 lncRNA upstream 16847 88714598 ~ 88715235 (-) True LOC118966063
TU109336 lncRNA upstream 47979 88745730 ~ 88746010 (-) True G98688
TU109337 lncRNA upstream 51185 88748936 ~ 88749160 (-) True G98689
TU109343 lncRNA upstream 59514 88757265 ~ 88782029 (-) False LOC118966065
XM_036988175.1 mRNA downstream 425287 88236581 ~ 88270980 (-) True LOC118936686
XM_036988180.1 mRNA downstream 425289 88236581 ~ 88270978 (-) False LOC118936686
XR_005053265.1 mRNA downstream 461997 88231941 ~ 88234270 (-) False LOC118966058
XR_005053264.1 mRNA downstream 465925 88227888 ~ 88230342 (-) False LOC118966057
XR_005053262.1 mRNA downstream 494109 88178952 ~ 88202158 (-) True papolg
XR_005053271.1 mRNA upstream 17122 88714873 ~ 88715334 (-) False LOC118966063
XR_005053270.1 mRNA upstream 17122 88714873 ~ 88715755 (-) False LOC118966063
XR_005053272.1 mRNA upstream 18567 88716318 ~ 88717077 (-) True LOC118966064
XR_005053273.1 mRNA upstream 80566 88778317 ~ 88782119 (-) False LOC118966065
XM_036979551.1 mRNA upstream 525399 89223150 ~ 89270341 (-) False ghitm
TU109256 other downstream 52200 88551974 ~ 88644067 (-) True G98616
TU109183 other downstream 381571 88314276 ~ 88314696 (-) True G98549
TU109140 other downstream 475463 88218829 ~ 88220804 (-) False G98510
TU109341 other upstream 79788 88777539 ~ 88782029 (-) False LOC118966065
TU109340 other upstream 80153 88777904 ~ 88782029 (-) True LOC118966065
TU109555 other upstream 378096 89075847 ~ 89076238 (-) True G98878
TU109710 other upstream 525399 89223150 ~ 89252088 (-) True ghitm
TU109727 other upstream 589463 89287214 ~ 89290056 (-) True G99035

Expression Profile