RNA id: TU109387


Basic Information

Item Value
RNA id TU109387
length 527
lncRNA type inter_gene
GC content 0.50
exon number 2
gene id G98731
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 88843285 ~ 88845344 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gggtaggtcagttaccagtggtactactgggtaggtcagttaccagtggcactgctgggtaggtcagttaccagtggtactactgggtaggtcagttccCAGTGgtgctactgggtaggtcagttaccagtggtactactgggtaggtcagttaccagtggtactgctgagtaggtcagttaccagtggtactactgggtaggtcagttaccagtggtactactgggtaggtcagttaccagtggtactactgggtaggtcagttaccagtggtactactgggtaggtcagttaccagtggtactactgggtagatcAGTTACCAGTGGAGTagtactacagggtaggtcagttaccagtggtactactgggtaggtcagttaccagtggtactacagggtaggtcagttaccagtggtactactggctaggtcagttaccagtggtactaatgggtaggtcagttaccagtggtactactgggtaggtcagttaccagtggtactactgggtagatcAGTTACCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU109364 lncRNA downstream 4684 88789091 ~ 88838601 (-) True G98713
TU109343 lncRNA downstream 61256 88757265 ~ 88782029 (-) False LOC118966065
TU109337 lncRNA downstream 94125 88748936 ~ 88749160 (-) True G98689
TU109336 lncRNA downstream 97275 88745730 ~ 88746010 (-) True G98688
TU109324 lncRNA downstream 128050 88714598 ~ 88715235 (-) True LOC118966063
TU109396 lncRNA upstream 9992 88855336 ~ 88855742 (-) True G98738
TU109402 lncRNA upstream 18244 88863588 ~ 88864800 (-) True G98744
TU109408 lncRNA upstream 26990 88872334 ~ 88872577 (-) True G98750
TU109456 lncRNA upstream 101686 88947030 ~ 88947321 (-) True G98792
TU109459 lncRNA upstream 104202 88949546 ~ 88949772 (-) True G98795
XR_005053273.1 mRNA downstream 61166 88778317 ~ 88782119 (-) False LOC118966065
XR_005053272.1 mRNA downstream 126208 88716318 ~ 88717077 (-) True LOC118966064
XR_005053270.1 mRNA downstream 127530 88714873 ~ 88715755 (-) False LOC118966063
XR_005053271.1 mRNA downstream 127951 88714873 ~ 88715334 (-) False LOC118966063
XM_036988175.1 mRNA downstream 572305 88236581 ~ 88270980 (-) True LOC118936686
XM_036979551.1 mRNA upstream 377806 89223150 ~ 89270341 (-) False ghitm
XM_036979087.1 mRNA upstream 377806 89223150 ~ 89270356 (-) False ghitm
XM_036978480.1 mRNA upstream 377806 89223150 ~ 89270371 (-) False ghitm
NM_001124503.2 mRNA upstream 378344 89223688 ~ 89267187 (-) False ghitm
XM_036988298.1 mRNA upstream 952568 89797912 ~ 89803793 (-) False fbxl15
TU109341 other downstream 61256 88777539 ~ 88782029 (-) False LOC118966065
TU109340 other downstream 61256 88777904 ~ 88782029 (-) True LOC118966065
TU109256 other downstream 199218 88551974 ~ 88644067 (-) True G98616
TU109183 other downstream 528589 88314276 ~ 88314696 (-) True G98549
TU109136 other downstream 622481 88219771 ~ 88220804 (-) True G98510
TU109555 other upstream 230503 89075847 ~ 89076238 (-) True G98878
TU109710 other upstream 377806 89223150 ~ 89252088 (-) True ghitm
TU109727 other upstream 441870 89287214 ~ 89290056 (-) True G99035
TU110424 other upstream 1112048 89957392 ~ 89957916 (-) True G99595
TU110433 other upstream 1118529 89963873 ~ 89964205 (-) True G99602

Expression Profile