RNA id: TU109402



Basic Information


Item Value
RNA id TU109402
length 232
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G98744
representative True

Chromosome Information


Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 88863588 ~ 88864800 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TATTTAACGATAATGTGGGTGTTGGTTGTTGGATTATAGTTATATTAgtagtttacctccatctcaggttggtagtttacctccatctcagGTTAgtagtttacctccatctcagGTTAgtagtttacctccatctcagGTTAGTAGTTTCACCTCCATCTCAGGTTggtagtttacctccatctcaggttggtagtttacctccatctcagGTTAgtagtttacctccatc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU109396 lncRNA downstream 7846 88855336 ~ 88855742 (-) True G98738
TU109387 lncRNA downstream 18244 88843285 ~ 88845344 (-) True G98731
TU109364 lncRNA downstream 24987 88789091 ~ 88838601 (-) True G98713
TU109343 lncRNA downstream 81559 88757265 ~ 88782029 (-) False LOC118966065
TU109337 lncRNA downstream 114428 88748936 ~ 88749160 (-) True G98689
TU109408 lncRNA upstream 7534 88872334 ~ 88872577 (-) True G98750
TU109456 lncRNA upstream 82230 88947030 ~ 88947321 (-) True G98792
TU109459 lncRNA upstream 84746 88949546 ~ 88949772 (-) True G98795
TU109504 lncRNA upstream 138397 89003197 ~ 89003397 (-) True G98834
TU109514 lncRNA upstream 144706 89009506 ~ 89009785 (-) True G98843
XR_005053273.1 mRNA downstream 81469 88778317 ~ 88782119 (-) False LOC118966065
XR_005053272.1 mRNA downstream 146511 88716318 ~ 88717077 (-) True LOC118966064
XR_005053270.1 mRNA downstream 147833 88714873 ~ 88715755 (-) False LOC118966063
XR_005053271.1 mRNA downstream 148254 88714873 ~ 88715334 (-) False LOC118966063
XM_036988175.1 mRNA downstream 592608 88236581 ~ 88270980 (-) True LOC118936686
XM_036979551.1 mRNA upstream 358350 89223150 ~ 89270341 (-) False ghitm
XM_036979087.1 mRNA upstream 358350 89223150 ~ 89270356 (-) False ghitm
XM_036978480.1 mRNA upstream 358350 89223150 ~ 89270371 (-) False ghitm
NM_001124503.2 mRNA upstream 358888 89223688 ~ 89267187 (-) False ghitm
XM_036988298.1 mRNA upstream 933112 89797912 ~ 89803793 (-) False fbxl15
TU109341 other downstream 81559 88777539 ~ 88782029 (-) False LOC118966065
TU109340 other downstream 81559 88777904 ~ 88782029 (-) True LOC118966065
TU109256 other downstream 219521 88551974 ~ 88644067 (-) True G98616
TU109183 other downstream 548892 88314276 ~ 88314696 (-) True G98549
TU109136 other downstream 642784 88219771 ~ 88220804 (-) True G98510
TU109555 other upstream 211047 89075847 ~ 89076238 (-) True G98878
TU109710 other upstream 358350 89223150 ~ 89252088 (-) True ghitm
TU109727 other upstream 422414 89287214 ~ 89290056 (-) True G99035
TU110424 other upstream 1092592 89957392 ~ 89957916 (-) True G99595
TU110433 other upstream 1099073 89963873 ~ 89964205 (-) True G99602

Expression Profile