RNA id: TU109511


Basic Information

Item Value
RNA id TU109511
length 582
lncRNA type antisense_over
GC content 0.44
exon number 1
gene id G98840
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 89011898 ~ 89012479 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGGTCTTCTCTGTATCTGTCAGCAGCTGTGTGTGGTCTCTGTCAGTGCTCAGAGTCAGTGAGCTGCTGGGTTTGGGGGACAGCGTTTTCAGCCCCTCGGGATTCTGGGTCATCTCCAACACGATAGGGTCACTGAGAAGGTCATCATCCTCCCAGTCAAAGTCCTCGTCTTTCGCCACAGTCGTCATGGCGTTCCACTGTCCCACTTCCTCTTTACCAGTACGAGCCGATGAACCAGACGTGCTTCCCCCGCCAGGCTTGACCTCCGACTCTTTGACGAGGTCATTGGCAGTGAGACGGCTGACCCCAACTTGAACCTTGACCTCCTGAGAACAGGTGGAGGCGGTCGACCCTTGGCTGAGCCGTCCGGTGACTCGCTGCGTCGGCCCGTCGAACAGAGCGTTAAGCTCCGCCTCTACCTGCTGGGCTGATGACGACATTGTCGTCGGGCCCTTGGGTTCCTCCCCGTAGCGGTTGTTGTTTATGGTATTGTTTGTGTGTTCAGCGCTCCTCTTCTCTCGGTCCTGCTGGTGCATGTTGATGTCAAACTGCCTGGCCAGCTGCATCAAGTCCTCCACTGAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU109514 lncRNA downstream 2113 89009506 ~ 89009785 (-) True G98843
TU109504 lncRNA downstream 8501 89003197 ~ 89003397 (-) True G98834
TU109459 lncRNA downstream 62126 88949546 ~ 88949772 (-) True G98795
TU109456 lncRNA downstream 64577 88947030 ~ 88947321 (-) True G98792
TU109408 lncRNA downstream 139321 88872334 ~ 88872577 (-) True G98750
TU109516 lncRNA upstream 5609 89018088 ~ 89019228 (-) False G98845
TU109520 lncRNA upstream 5609 89018088 ~ 89019228 (-) True G98845
TU109523 lncRNA upstream 7315 89019794 ~ 89021561 (-) False G98846
TU109521 lncRNA upstream 8669 89021148 ~ 89021720 (-) False G98846
TU109522 lncRNA upstream 8669 89021148 ~ 89021561 (-) True G98846
XR_005053273.1 mRNA downstream 229779 88778317 ~ 88782119 (-) False LOC118966065
XR_005053272.1 mRNA downstream 294821 88716318 ~ 88717077 (-) True LOC118966064
XR_005053270.1 mRNA downstream 296143 88714873 ~ 88715755 (-) False LOC118966063
XR_005053271.1 mRNA downstream 296564 88714873 ~ 88715334 (-) False LOC118966063
XM_036988175.1 mRNA downstream 740918 88236581 ~ 88270980 (-) True LOC118936686
XM_036979551.1 mRNA upstream 210671 89223150 ~ 89270341 (-) False ghitm
XM_036979087.1 mRNA upstream 210671 89223150 ~ 89270356 (-) False ghitm
XM_036978480.1 mRNA upstream 210671 89223150 ~ 89270371 (-) False ghitm
NM_001124503.2 mRNA upstream 211209 89223688 ~ 89267187 (-) False ghitm
XM_036988298.1 mRNA upstream 785433 89797912 ~ 89803793 (-) False fbxl15
TU109341 other downstream 229869 88777539 ~ 88782029 (-) False LOC118966065
TU109340 other downstream 229869 88777904 ~ 88782029 (-) True LOC118966065
TU109256 other downstream 367831 88551974 ~ 88644067 (-) True G98616
TU109183 other downstream 697202 88314276 ~ 88314696 (-) True G98549
TU109136 other downstream 791094 88219771 ~ 88220804 (-) True G98510
TU109555 other upstream 63368 89075847 ~ 89076238 (-) True G98878
TU109710 other upstream 210671 89223150 ~ 89252088 (-) True ghitm
TU109727 other upstream 274735 89287214 ~ 89290056 (-) True G99035
TU110424 other upstream 944913 89957392 ~ 89957916 (-) True G99595
TU110433 other upstream 951394 89963873 ~ 89964205 (-) True G99602

Expression Profile