RNA id: TU109864


Basic Information

Item Value
RNA id TU109864
length 337
RNA type TUCP
GC content 0.46
exon number 1
gene id G99160
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 89458735 ~ 89459071 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTCAACTGGTTCCAACAGCATCACCAAATGCTACTGCAGTCAATTGGTTGCAACAGCATCACCAAATGCTACTGCAGTCAACTGGTTCCAACAGCATCACCAAATGCTACAGCAGTCAACTGGTTTCAACAGCATCACCAAATGCTACAGCAGTCAACTGGTTCCAACAGCATCCCCAAATGCTACAGCAGTCAACTGGTTCCAACAGCATCACCAAATGTTACATCAGTCAACTGGTTGCAACAGCATCACCAAATGCTACAGCAGTCAACTGGTTCCAACAGCATCACCAAATGCTACAGCAGTCAACTGGTTCCAACAGCATCACCAAATGCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU109861 lncRNA upstream 859 89455019 ~ 89457876 (+) True G99157
TU109857 lncRNA upstream 5091 89453294 ~ 89453644 (+) True G99153
TU109845 lncRNA upstream 19241 89438768 ~ 89439494 (+) True G99144
TU109825 lncRNA upstream 41493 89416902 ~ 89417242 (+) True G99124
TU109824 lncRNA upstream 43464 89415005 ~ 89415271 (+) True G99123
TU109865 lncRNA downstream 147 89459218 ~ 89459518 (+) True G99161
TU109867 lncRNA downstream 3274 89462345 ~ 89462562 (+) True G99163
TU109870 lncRNA downstream 7415 89466486 ~ 89466708 (+) True G99166
TU109883 lncRNA downstream 24061 89483132 ~ 89483370 (+) True G99179
TU109884 lncRNA downstream 26978 89486049 ~ 89486271 (+) True G99180
XM_036988250.1 mRNA upstream 170111 89270808 ~ 89288624 (+) False LOC110510724
XM_036988247.1 mRNA upstream 438135 89018704 ~ 89020600 (+) True LOC118966069
XM_036988242.1 mRNA upstream 440465 89007456 ~ 89018270 (+) False si:dkey-78p8.1
XM_036988231.1 mRNA upstream 466275 88981098 ~ 88992460 (+) True LOC110518194
XM_036988237.1 mRNA upstream 466329 88981098 ~ 88992406 (+) False LOC110518194
XM_036988262.1 mRNA downstream 129294 89588365 ~ 89663139 (+) False LOC110514249
XM_036988276.1 mRNA downstream 129294 89588365 ~ 89663139 (+) False LOC110514249
XM_036988279.1 mRNA downstream 129294 89588365 ~ 89663139 (+) False LOC110514249
XM_036988283.1 mRNA downstream 129294 89588365 ~ 89663139 (+) False LOC110514249
XM_036988284.1 mRNA downstream 129294 89588365 ~ 89663139 (+) False LOC110514249
TU109662 other upstream 170968 89270896 ~ 89287767 (+) True LOC110510724
TU108836 other upstream 714322 88637050 ~ 88744413 (+) True LOC118966060
TU108796 other upstream 808941 88646456 ~ 88649794 (+) True LOC118966062
TU108810 other upstream 815284 88641013 ~ 88643451 (+) False LOC118966061
TU108569 other upstream 1314294 88131038 ~ 88144441 (+) False G98104
TU109978 other downstream 200190 89659261 ~ 89660421 (+) False G99246
TU110229 other downstream 380797 89839868 ~ 89841791 (+) True G99440
TU110260 other downstream 448701 89907772 ~ 89908434 (+) True G99466
TU110265 other downstream 456009 89915080 ~ 89918120 (+) False G99470
TU110279 other downstream 490368 89949439 ~ 89950884 (+) True G99484

Expression Profile