RNA id: TU110324


Basic Information

Item Value
RNA id TU110324
length 2456
lncRNA type read_through
GC content 0.40
exon number 3
gene id G99521
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 89796656 ~ 89879927 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACCAGAACATAAGAATGATAACAGTTTTGCTTCCCTCAACATGACAGAATtaacaatatttatttttgggATTGTTGAATAATACTGCAAGAGAAGTATTTGAATGACTCGTTGTAATAATTTGCAGTTCAGTAAAACTCTACAATTAGTTCTCAGTAGCATTTCACATTAAAGTATTCTGTCCCCAGATCAACGTGTGCTGTATATCCAACTCCTACAGCTGTTTCGATGTACAGCACAAACCCATCCGGAACTGAGACCAGGCTAACATGAAAGCCCCTTTTTTTGTTCAAAAGTTCCATGCAGATGTCATGTCCTGTCTCTGTACCTCCTTCAGGTTGGCACGTCTATCGGACTCAGCCATGGTCCACTAAAGTACATTAAATACAGTAAACCACCAATTCATTCATATCTGATGGAACTAAAACACTTAGATCTGCATTGTGGTACGTGTCATTTCTGCCTTTCACGGCCTTTGGCTGTTTTTAACCAGACTAAATGGGATGTGAACACAGAAAGGATCAGGAATGGATTAAAGTAATCATAAGGCATTGGGCAGTAGTAGAGTATCCTGACTCAGTCTTTTTAAGTACAGTCAacaatgtgatttcctgtgttttatatatatatatatatatccttttagtggtaagagctgtttgaaaagactgcctgaaatttcagcctgttttggtgagaGGGAGTTTTGGCCTcacatggtgacatcaccatgtggtaaatgagttaatatagaccaataagaaagagagttccagacctctctgccaataacagctcgtCTTCAGTTTCCCCCTTCTCACTCAGAACCACTTCCAGAcacttgcttgagaaattgctttttGCTACAAAGCTATTTTTCTTTTTGACCAtattaattgaaaacaatcacactaAGGTAGttaaattgttacccagaaatgctAGACATTGCGATAAAAATAGCTGCTTTCGACctttaaaatggtttaaaaaGGTGCTCAAATAATTCATTTTATTAAGGAAAAAAGTACTTAAAGCAATACATTTTCATGCCATTTTCTTTCAGTAAATGAAAACCACAAATGGCGAAAAAAATACACAATAAATGCTTACAGAACATTTTGTCAAGCTAACATACAAACAGAATCTTTCAAGTTGAATGAAAAGTAACTCCCCTATTGAACAAGGTCCTAAGTCACAATCTGTGCCTCTGTAGAACATCCAAACAGCCCCTGGATCTTCTATCGACCAAATAACACCTGGGCCTCACTGCATGGTGTTACTTCCTTACTGAGACAAACACATCACCGAGAATGCATCCGTGTCAATGTTATCGTTTGCATGCTATACGACTGTCTCAGGTAACAACTAATTGACTTTATGTAGCTAGTGTCAGGGAAATCAGGGCAGTTGTTTAGGTTATGACAAAGACCACACTTTTAAGCGTtggcccagtaaccgaaaggtcactggttcgaatcccagagctgactaggtgaaaaaaaaaaaaaaaaatgccgatgtgcccttgagcaaggcacttaaccctaattgctcctgtaagttgctctggataagagccgtCTGCTAAATGTCTGAAAAAGTTTTAAAATCTTGTACAATCTTATGACCTAAGTAGCTTGCTAAACAGCATTATCCAGCTACAAGCGGCTAATAACGTCTCTATGGTAAGGCTGCACTAACTAGACATGTCCAACCAATGGCACATTATGGGCACATAGAGGTAACTTGCAAAATAAAAACAACATCAATATCGTCTCAATAGAACGCTGGCCCACCaccagccagaacagcttcaccgtggcatagattctacacgTGTCTGGAACTCTGTTGGGAGGGCTTGCGACACCATTATTCCAGGAGAAATTCCACCAGTTGGTGTTTTGGTGGCGGCGGTGTAAAACGCCGTCTCAGGGCGCCGCTTCAGAATCTCCCGtaaagtgttcaattgggttgagatctggtgactgagacggcacATGGTTTACATCGTATTCATGCTTATCAAACCACTCGTGCCCTGTTGTGGGATGGGGGGCATTGTCATCTTATGGGGATGTAGCCATGGTAACCGTAATAAATGGCCTGCCCAGCCATTTGTATGCATGACCCTAAGCATTATGGGATGTTAATtgtttaattaactcaggaaaccacacctgtgtggaagcacctgcttcaatacactttgtatccctcatttactccaGTGGTATTATTTTAGATTTATTATCAAATATTACGAGAAAATCCACTAACATTTTCATGCTATGGCAGAGAGGAAGATATGGAAGAAATGTACCGTAAAGTAGTTGGTGAATGTTTTAAACTAAATGTGGATTAACTCCTTATTTAACTGTGTTCTCAATAAGTTAAATATTATGATACTGGGGATactggggcaggtagactagtggttagaacgttgggcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU110084 lncRNA downstream 126503 89669698 ~ 89670153 (-) True G99324
TU110083 lncRNA downstream 129119 89666659 ~ 89667537 (-) True G99323
TU110077 lncRNA downstream 143382 89652797 ~ 89653274 (-) True G99317
TU110073 lncRNA downstream 148780 89647250 ~ 89647876 (-) True G99313
TU110031 lncRNA downstream 232978 89563426 ~ 89563678 (-) True G99275
TU110391 lncRNA upstream 3919 89883846 ~ 89886043 (-) True G99570
TU110393 lncRNA upstream 7502 89887429 ~ 89887924 (-) False G99571
TU110395 lncRNA upstream 7502 89887429 ~ 89887924 (-) True G99571
TU110404 lncRNA upstream 23892 89903819 ~ 89904441 (-) False G99579
TU110407 lncRNA upstream 23892 89903819 ~ 89904441 (-) True G99579
XM_036978480.1 mRNA downstream 526285 89223150 ~ 89270371 (-) False ghitm
XM_036979087.1 mRNA downstream 526300 89223150 ~ 89270356 (-) False ghitm
XM_036979551.1 mRNA downstream 526315 89223150 ~ 89270341 (-) False ghitm
NM_001124503.2 mRNA downstream 529469 89223688 ~ 89267187 (-) False ghitm
XR_005053273.1 mRNA downstream 1014537 88778317 ~ 88782119 (-) False LOC118966065
XM_036988407.1 mRNA upstream 20411 89900338 ~ 89902504 (-) False LOC118966075
XM_036988401.1 mRNA upstream 20411 89900338 ~ 89902518 (-) True LOC118966075
XM_036988448.1 mRNA upstream 32371 89912298 ~ 89920373 (-) False LOC110519290
XM_036988442.1 mRNA upstream 32371 89912298 ~ 89920450 (-) False LOC110519290
XM_036988457.1 mRNA upstream 32371 89912298 ~ 89920458 (-) False LOC110519290
TU109727 other downstream 506600 89287214 ~ 89290056 (-) True G99035
TU109710 other downstream 544568 89223150 ~ 89252088 (-) True ghitm
TU109555 other downstream 720418 89075847 ~ 89076238 (-) True G98878
TU109341 other downstream 1014627 88777539 ~ 88782029 (-) False LOC118966065
TU110424 other upstream 77465 89957392 ~ 89957916 (-) True G99595
TU110433 other upstream 83946 89963873 ~ 89964205 (-) True G99602
TU111315 other upstream 747606 90627533 ~ 90684839 (-) False G100197
TU111345 other upstream 748041 90627968 ~ 90736095 (-) False G100197
TU111268 other upstream 749745 90629672 ~ 90858972 (-) False G100197

Expression Profile