RNA id: TU110404


Basic Information

Item Value
RNA id TU110404
length 549
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G99579
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 89903819 ~ 89904441 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTAATAATACTATGCAACATGAcatgtagcctagcggttagagcgttggtccagtaaccgagaggttgctggttcaaatacccgagcagacaaggtgcaaaatatgtcgatgtgcccttgagcaaggcacttaaccctaatttgcatcaggggtgctgtactactatggctgaccctgtaaaacaacacctatcatactactatgactgaccctgtaaaacaacacctatcatactactatgactgaccctgtaaaacaacacctatcatactactatgactgaccctgtaaaacaacacctatcatactactatgactgaccctgtaaaacaacacctatcatactacaatgactgaccctgtaaaacaacacctatcatactactatgactgaccctgcaaaacaacacctatcatactactatgactgaccctgtaaaacaacacctatcatactactatgactgaccctgtaaaacaacacctatcatactactatggctgaccctgtaaaacaacacctatcatactactatgactgacaatgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU110393 lncRNA downstream 15895 89887429 ~ 89887924 (-) False G99571
TU110395 lncRNA downstream 15895 89887429 ~ 89887924 (-) True G99571
TU110391 lncRNA downstream 17776 89883846 ~ 89886043 (-) True G99570
TU110321 lncRNA downstream 28915 89873759 ~ 89874904 (-) True G99518
TU110383 lncRNA downstream 30982 89864618 ~ 89872837 (-) True G99565
TU110410 lncRNA upstream 3397 89907838 ~ 89908447 (-) True G99581
TU110412 lncRNA upstream 5026 89909467 ~ 89909729 (-) True G99583
TU110314 lncRNA upstream 7857 89912298 ~ 89920318 (-) True LOC110519290
TU110414 lncRNA upstream 25731 89930172 ~ 89930476 (-) True G99585
TU110415 lncRNA upstream 26208 89930649 ~ 89931012 (-) True G99586
XM_036988401.1 mRNA downstream 1301 89900338 ~ 89902518 (-) True LOC118966075
XM_036988407.1 mRNA downstream 1315 89900338 ~ 89902504 (-) False LOC118966075
XM_036988298.1 mRNA downstream 100026 89797912 ~ 89803793 (-) False fbxl15
XR_005053290.1 mRNA downstream 100026 89797912 ~ 89803793 (-) False fbxl15
XM_036978480.1 mRNA downstream 633448 89223150 ~ 89270371 (-) False ghitm
XM_036988448.1 mRNA upstream 7857 89912298 ~ 89920373 (-) False LOC110519290
XM_036988442.1 mRNA upstream 7857 89912298 ~ 89920450 (-) False LOC110519290
XM_036988457.1 mRNA upstream 7857 89912298 ~ 89920458 (-) False LOC110519290
XM_036988479.1 mRNA upstream 204855 90109296 ~ 90115842 (-) True LOC118936688
XM_036988484.1 mRNA upstream 212060 90116501 ~ 90140061 (-) False LOC110515022
TU109727 other downstream 613763 89287214 ~ 89290056 (-) True G99035
TU109710 other downstream 651731 89223150 ~ 89252088 (-) True ghitm
TU109555 other downstream 827581 89075847 ~ 89076238 (-) True G98878
TU109341 other downstream 1121790 88777539 ~ 88782029 (-) False LOC118966065
TU110424 other upstream 52951 89957392 ~ 89957916 (-) True G99595
TU110433 other upstream 59432 89963873 ~ 89964205 (-) True G99602
TU111315 other upstream 723092 90627533 ~ 90684839 (-) False G100197
TU111345 other upstream 723527 90627968 ~ 90736095 (-) False G100197
TU111268 other upstream 725231 90629672 ~ 90858972 (-) False G100197

Expression Profile