RNA id: TU110424


Basic Information

Item Value
RNA id TU110424
length 525
RNA type TUCP
GC content 0.52
exon number 1
gene id G99595
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 89957392 ~ 89957916 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cagccgtccaccaatcaggcctttatggtagagtggccaaacggaagccactcctcagtaaaaaaggcacatgacagccgcttggagtttgtcaaaaggcacctaaaggactctcagaccatgagacaacaagatgctctggtctgatgaaaccaagattgaactcactggcctgaatgccaagcatattgtctggagtaaacctggcaccatccctaaagactgggagactagtcaggatcgagggaaagatgaaaggagcaaagtacagagagatccttgatgaaaagctgctccagagcgctcaggacctcagactggggcgaaggttcaccttccaacaggacaacgaccctaagcacacagccaagacaacgcaggagtggcttcaggacaagtctctgaatgtccttgagtggcccagccagagcccggacttgaacccgatcgaacatctctggagagacctgagaatagctgtgcagcgacactccccatcaaacctgacagagctgagaggatctg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU110423 lncRNA downstream 252 89956791 ~ 89957140 (-) True G99594
TU110422 lncRNA downstream 749 89956432 ~ 89956643 (-) True G99593
TU110416 lncRNA downstream 24993 89932064 ~ 89932399 (-) True G99587
TU110415 lncRNA downstream 26380 89930649 ~ 89931012 (-) True G99586
TU110414 lncRNA downstream 26916 89930172 ~ 89930476 (-) True G99585
TU110425 lncRNA upstream 143 89958059 ~ 89958338 (-) True G99596
TU110426 lncRNA upstream 527 89958443 ~ 89958729 (-) True G99597
TU110428 lncRNA upstream 2412 89960328 ~ 89961792 (-) True G99599
TU110429 lncRNA upstream 4177 89962093 ~ 89962621 (-) True G99600
TU110432 lncRNA upstream 4809 89962725 ~ 89962988 (-) True G99601
XM_036988457.1 mRNA downstream 36934 89912298 ~ 89920458 (-) False LOC110519290
XM_036988442.1 mRNA downstream 36942 89912298 ~ 89920450 (-) False LOC110519290
XM_036988448.1 mRNA downstream 37019 89912298 ~ 89920373 (-) False LOC110519290
XM_036988401.1 mRNA downstream 54874 89900338 ~ 89902518 (-) True LOC118966075
XM_036988407.1 mRNA downstream 54888 89900338 ~ 89902504 (-) False LOC118966075
XM_036988479.1 mRNA upstream 151380 90109296 ~ 90115842 (-) True LOC118936688
XM_036988484.1 mRNA upstream 158585 90116501 ~ 90140061 (-) False LOC110515022
XM_036988490.1 mRNA upstream 158585 90116501 ~ 90141821 (-) False LOC110515022
XM_036988488.1 mRNA upstream 158585 90116501 ~ 90141830 (-) True LOC110515022
XM_036988497.1 mRNA upstream 184528 90142444 ~ 90150083 (-) False LOC110515023
TU109727 other downstream 667336 89287214 ~ 89290056 (-) True G99035
TU109710 other downstream 705304 89223150 ~ 89252088 (-) True ghitm
TU109555 other downstream 881154 89075847 ~ 89076238 (-) True G98878
TU109341 other downstream 1175363 88777539 ~ 88782029 (-) False LOC118966065
TU109340 other downstream 1175363 88777904 ~ 88782029 (-) True LOC118966065
TU110433 other upstream 5957 89963873 ~ 89964205 (-) True G99602
TU111315 other upstream 669617 90627533 ~ 90684839 (-) False G100197
TU111345 other upstream 670052 90627968 ~ 90736095 (-) False G100197
TU111268 other upstream 671756 90629672 ~ 90858972 (-) False G100197
TU111283 other upstream 671756 90629672 ~ 90782397 (-) False G100197

Expression Profile