RNA id: TU111049


Basic Information

Item Value
RNA id TU111049
length 519
lncRNA type intronic
GC content 0.62
exon number 2
gene id G100023
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 90197603 ~ 90199466 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtaacatcatcaatgtgaagtaacaacatcaatgtgaagtaacaaggggtaacaacatcaatgtgaagtaaCAAGGGGTAACAACATAAATGTGAAGTAACAAGGGgtaacaacatcaatgtgaagtaacaaggggtaacaacatcaatgtgaagtaacaaggggtaacaacaacaacaatgtgaAGTAACAAcaacatcaatgtgaagtaacaaggggtaacaacaacatcaatgtgaagtaacaaggggtaacaacatcaatgtgaagtaaCAAGGGGTAACAACAACAATGTGAAgtaacaacatcaatgtgaagtaacaaggggtaacaacatcaatgtgaagtaacaaggggtaacaacatcaatgtgaagtaaCAAGGGGTAACAACAACAATGTGAAgtaacaacatcaatgtgaagtaacaaggggtaacaacatcaatgtgaagtaacaaggggtaacaacatcaatgtgaagtaacaaggggtaacaacatcaatgtgaagtaacaagg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU110955 lncRNA downstream 20294 90176784 ~ 90177309 (-) True G99957
TU110951 lncRNA downstream 46409 90101063 ~ 90151194 (-) True G99954
TU111016 lncRNA downstream 60113 90124595 ~ 90137490 (-) True G99995
TU110946 lncRNA downstream 88401 90106061 ~ 90109202 (-) True G99951
TU111011 lncRNA downstream 91978 90104240 ~ 90105625 (-) True G99991
TU111080 lncRNA upstream 56349 90255815 ~ 90256156 (-) True G100051
TU111107 lncRNA upstream 109447 90308913 ~ 90310511 (-) True G100076
TU111093 lncRNA upstream 114974 90314440 ~ 90316871 (-) True G100062
TU111133 lncRNA upstream 152895 90352361 ~ 90353162 (-) True G100096
TU111137 lncRNA upstream 164588 90364054 ~ 90364415 (-) True G100100
XM_036976557.1 mRNA downstream 41285 90151430 ~ 90156318 (-) True LOC110515024
XM_036988510.1 mRNA downstream 46904 90142444 ~ 90150699 (-) True LOC110515023
XM_036988505.1 mRNA downstream 47170 90142444 ~ 90150433 (-) False LOC110515023
XM_036988498.1 mRNA downstream 47507 90142444 ~ 90150096 (-) False LOC110515023
XM_036988497.1 mRNA downstream 47520 90142444 ~ 90150083 (-) False LOC110515023
XM_036990051.1 mRNA upstream 283255 90482721 ~ 90498148 (-) True LOC110532927
XM_036988548.1 mRNA upstream 348774 90548240 ~ 90602774 (-) False LOC110531748
XM_036988550.1 mRNA upstream 348774 90548240 ~ 90602774 (-) False LOC110531748
XM_036988559.1 mRNA upstream 348774 90548240 ~ 90602774 (-) False LOC110531748
XM_036988544.1 mRNA upstream 349737 90549203 ~ 90602774 (-) False LOC110531748
TU110433 other downstream 233398 89963873 ~ 89964205 (-) True G99602
TU110424 other downstream 239687 89957392 ~ 89957916 (-) True G99595
TU109727 other downstream 907547 89287214 ~ 89290056 (-) True G99035
TU109710 other downstream 945515 89223150 ~ 89252088 (-) True ghitm
TU109555 other downstream 1121365 89075847 ~ 89076238 (-) True G98878
TU111315 other upstream 428067 90627533 ~ 90684839 (-) False G100197
TU111345 other upstream 428502 90627968 ~ 90736095 (-) False G100197
TU111268 other upstream 430206 90629672 ~ 90858972 (-) False G100197
TU111283 other upstream 430206 90629672 ~ 90782397 (-) False G100197
TU111290 other upstream 430206 90629672 ~ 90782397 (-) False G100197

Expression Profile