RNA id: TU111307


Basic Information

Item Value
RNA id TU111307
length 402
lncRNA type read_through
GC content 0.53
exon number 2
gene id G100197
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 90625080 ~ 90858972 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCTGGGAGTGCAGCAGTCCAACACGCTCGCTGGCGTCCACCAGCTCAGTCTCAGCCACTTTgcggcctctctctgtctgctccagaGCAACTCTCAGCTCCTCGATTTCAGCCACTTTgcggcctctctctgtctgctccagaGCAACTCTCAGCTCCTCGATTTCAGCCACCATCAGACCGTTTCTGCGCTCCACCATGGCTGCCTGCTCCTTCATGTCCTCTGCGGCGCGGACGGCATCATCAAGGTGCAATTGGGCATCCTGGGGTTCACAATTACATAGTATCATTAGACTTGTGGAAGTAGGGGCGATAGGATTGGTAATAAGGGGGAATgggggataactagtcagttgtacaactgactgccttcaactgaaatgtgtcttctgcaatTAACCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU111384 lncRNA downstream 54342 90581994 ~ 90582224 (-) True G100216
TU111383 lncRNA downstream 55180 90581164 ~ 90581386 (-) True G100215
TU111375 lncRNA downstream 60314 90575532 ~ 90576252 (-) True G100207
TU111259 lncRNA downstream 70622 90564801 ~ 90565944 (-) False G100192
TU111355 lncRNA upstream 320 90688074 ~ 90740440 (-) True G100198
TU111431 lncRNA upstream 15590 90703344 ~ 90755360 (-) True G100247
TU111402 lncRNA upstream 35798 90723552 ~ 90768876 (-) False G100227
TU111358 lncRNA upstream 44319 90732073 ~ 90776694 (-) True G100199
TU111367 lncRNA upstream 48472 90736226 ~ 90780709 (-) False G100202
XM_036988548.1 mRNA downstream 33792 90548240 ~ 90602774 (-) False LOC110531748
XM_036990066.1 mRNA upstream 5825 90693579 ~ 90695233 (-) True LOC118966736
XM_036990069.1 mRNA upstream 7527 90695281 ~ 90696935 (-) True LOC118966737
XM_036990074.1 mRNA upstream 57639 90745393 ~ 90746606 (-) True LOC118966738
XM_036990078.1 mRNA upstream 58898 90746652 ~ 90748391 (-) True LOC118966739
XM_036990082.1 mRNA upstream 115570 90803324 ~ 90813931 (-) True LOC110513773
TU110433 other downstream 672361 89963873 ~ 89964205 (-) True G99602
TU110424 other downstream 678650 89957392 ~ 89957916 (-) True G99595
TU109727 other downstream 1346510 89287214 ~ 89290056 (-) True G99035
TU109710 other downstream 1384478 89223150 ~ 89252088 (-) True ghitm
TU109555 other downstream 1560328 89075847 ~ 89076238 (-) True G98878
TU111282 other upstream 7579 90695333 ~ 90748416 (-) False G100197
TU111325 other upstream 93266 90781020 ~ 90782397 (-) False G100197
TU111293 other upstream 115691 90803445 ~ 90856566 (-) False G100197
TU111298 other upstream 115691 90803445 ~ 90856566 (-) False G100197
TU111318 other upstream 167201 90854955 ~ 90856343 (-) True G100197

Expression Profile