RNA id: TU111282


Basic Information

Item Value
RNA id TU111282
length 437
RNA type TUCP
GC content 0.41
exon number 3
gene id G100197
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 90625080 ~ 90858972 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gctctggacagacgggagactctggccaaGAAGAAGGAGTTGGAGGAGAAGATGGTGGCCATGGTGCAGGAGAAGAATGACCTGGCGCTTCAAGTCGCATCTGATTCAGAGAATCTGAACGATGCTGAGGAAAGGTGTGAGGGGCTCATCAAGAGCAAGATCCAGCTGGAGGCCAAACTCAAAGAGACGACTGAGaggctggaggatgaggaggagatgaaTGCTGAGTTGACTGCCAAGAAGAGGAAGCTGGAGGATGAGTGTTCTGAGCTGAAGAAGGACATTGATGACCTGGAGCTCACCTTGGCCAAAGTGGAGAAGGAGAAGCACGCCACTGAAAACAAGGTTAAAAACCTGACAGAGGAGATGGCGTCTATGGATGAGAGTGTTGCCAAGCTGACCAAGGAGAAGAAAGTCCTCCAAGAGGCCCACCAGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU111373 lncRNA downstream 5862 90638401 ~ 90689471 (-) True G100205
TU111291 lncRNA downstream 7579 90636566 ~ 90687754 (-) False G100197
TU111307 lncRNA downstream 7579 90636566 ~ 90687754 (-) False G100197
TU111336 lncRNA downstream 9958 90628291 ~ 90685375 (-) False G100197
TU111286 lncRNA downstream 13504 90625080 ~ 90681829 (-) False G100197
TU111329 lncRNA upstream 1953 90750369 ~ 90773636 (-) False G100197
TU111372 lncRNA upstream 2730 90751146 ~ 90772190 (-) True G100204
TU111400 lncRNA upstream 19740 90768156 ~ 90768876 (-) True G100227
TU111456 lncRNA upstream 119074 90867490 ~ 90867760 (-) True G100271
TU111464 lncRNA upstream 136400 90884816 ~ 90890245 (-) False G100278
XM_036990066.1 mRNA downstream 100 90693579 ~ 90695233 (-) True LOC118966736
LOC118966735 mRNA downstream 38314 90645978 ~ 90657019 (-) True LOC118966735
XM_036988550.1 mRNA downstream 92559 90548240 ~ 90602774 (-) False LOC110531748
XM_036990082.1 mRNA upstream 54908 90803324 ~ 90813931 (-) True LOC110513773
XM_036988624.1 mRNA upstream 171579 90919995 ~ 90969586 (-) False LOC118936689
XM_036988621.1 mRNA upstream 171579 90919995 ~ 90970589 (-) False LOC118936689
XM_036988617.1 mRNA upstream 171579 90919995 ~ 90970591 (-) True LOC118936689
XM_036988630.1 mRNA upstream 234851 90983267 ~ 91072716 (-) False LOC110516041
TU111315 other downstream 10494 90627533 ~ 90684839 (-) False G100197
TU110433 other downstream 731128 89963873 ~ 89964205 (-) True G99602
TU110424 other downstream 737417 89957392 ~ 89957916 (-) True G99595
TU109727 other downstream 1405277 89287214 ~ 89290056 (-) True G99035
TU109710 other downstream 1443245 89223150 ~ 89252088 (-) True ghitm
TU111325 other upstream 32604 90781020 ~ 90782397 (-) False G100197
TU111293 other upstream 55029 90803445 ~ 90856566 (-) False G100197
TU111298 other upstream 55029 90803445 ~ 90856566 (-) False G100197
TU111318 other upstream 106539 90854955 ~ 90856343 (-) True G100197
TU111641 other upstream 234319 90982735 ~ 90985169 (-) True LOC110516041

Expression Profile