RNA id: TU111293


Basic Information

Item Value
RNA id TU111293
length 591
RNA type TUCP
GC content 0.45
exon number 5
gene id G100197
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 90625080 ~ 90858972 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CATTTTCTGTCAGGAGTCTGGCCCTCTGTCCGCTGATGTCGTTGACCTGACGAGCATTCTCATCATTCTTAGTCTTGAGCTCGCTCAGCTGGTCCTCAAGAGTACGGCACATCTTCTCCAAGCGGACAGAGGGCCAGACTCCTGACAGAAAATGGTGAGTTTGGCCgccagctggaggagaaggaaGCCCTGGTGTCTCAGCTGACCAGAGGCAAACAGGCCTTCACCCagcaggtggaggagctgaagagaCTGATTGAGGAGGAGGTCAAGgctaAAAACGCACTGGCCCATGGTGTCCAGTCTGCCCGCCATGACTGTGATCTCCTGAGAGAGCAGtttgaggaggagcaggaggccaAGGCAGAGCTGCAGCGCGGCATGTCCAAGGCCAACAGTGAGGTGGCTCAGTGGAGGACTAAGTATGAAACTGATGCCATCCAACGcacagaggagctggaggaggccaAGAAGAAGCTGGCCCAGCGTCTGCAGGAGGCTGAGGAGACCATTGAGGCGACCAACTCAAAGTGTGCCTCCCTGGAGAAGACCAAGCAGAGActgcagggagaggtggaggacctCATGATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU111365 lncRNA downstream 5234 90741415 ~ 90798211 (-) True G100201
TU111351 lncRNA downstream 7138 90739591 ~ 90796307 (-) False G100197
TU111344 lncRNA downstream 7416 90687513 ~ 90796029 (-) False G100197
TU111316 lncRNA downstream 7416 90739591 ~ 90796029 (-) False G100197
TU111367 lncRNA downstream 22736 90736226 ~ 90780709 (-) False G100202
TU111456 lncRNA upstream 10924 90867490 ~ 90867760 (-) True G100271
TU111464 lncRNA upstream 28250 90884816 ~ 90890245 (-) False G100278
TU111465 lncRNA upstream 30139 90886705 ~ 90890245 (-) True G100278
TU111470 lncRNA upstream 39121 90895687 ~ 90898053 (-) True G100282
TU111476 lncRNA upstream 51923 90908489 ~ 90909346 (-) True G100288
XM_036990078.1 mRNA downstream 55054 90746652 ~ 90748391 (-) True LOC118966739
XM_036990074.1 mRNA downstream 56839 90745393 ~ 90746606 (-) True LOC118966738
XM_036990069.1 mRNA downstream 106510 90695281 ~ 90696935 (-) True LOC118966737
XM_036990066.1 mRNA downstream 108212 90693579 ~ 90695233 (-) True LOC118966736
LOC118966735 mRNA downstream 146426 90645978 ~ 90657019 (-) True LOC118966735
XM_036988624.1 mRNA upstream 63429 90919995 ~ 90969586 (-) False LOC118936689
XM_036988621.1 mRNA upstream 63429 90919995 ~ 90970589 (-) False LOC118936689
XM_036988617.1 mRNA upstream 63429 90919995 ~ 90970591 (-) True LOC118936689
XM_036988630.1 mRNA upstream 126701 90983267 ~ 91072716 (-) False LOC110516041
XM_036988631.1 mRNA upstream 126701 90983267 ~ 91072716 (-) False LOC110516041
TU111283 other downstream 21048 90629672 ~ 90782397 (-) False G100197
TU111290 other downstream 21048 90629672 ~ 90782397 (-) False G100197
TU111302 other downstream 21048 90629672 ~ 90782397 (-) False G100197
TU111340 other downstream 21048 90629672 ~ 90782397 (-) False G100197
TU111325 other downstream 21048 90781020 ~ 90782397 (-) False G100197
TU111641 other upstream 126169 90982735 ~ 90985169 (-) True LOC110516041
TU111909 other upstream 376174 91232740 ~ 91233788 (-) True G100582
TU112492 other upstream 936013 91792579 ~ 91797445 (-) True LOC110531398
TU113894 other upstream 1735015 92591581 ~ 92595514 (-) True G102060
TU113918 other upstream 1780732 92637298 ~ 92638881 (-) True G102083

Expression Profile