RNA id: TU111687


Basic Information

Item Value
RNA id TU111687
length 651
lncRNA type antisense_over
GC content 0.45
exon number 1
gene id G100415
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 91085890 ~ 91086540 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTCACATAGACACTTGACATGTTGACCAGCTCTACAAGACATGCAGAAACAGATTGGTAAATGCCTCTTCAAGGCATAACTCAGGAAAGCCTCTGTTGCTCTCTTCATTCTTAGAACAAAAACATACTGAAGCATTCTGGATACTGAGATTTCGTATTTAATTAGGAGTGAAGTATAAGTAAGGCAAAATAAGATATTTCTAAATTCCCTCATGATTACAAGCGTGAAAGTCTATATTTTCCCCTAAAATATTTGATATGGGGATGTGTGGTCTTATGCAGTAGTGGTAGAAAAGCTGTTTTTGTGTATTTCAAATGGTCACGTAGACCATTAACATGCCACCGACCATTAAAACACTTCCGGTTTACATAGTGCCACATCTAATGTACAATTCTACCCATACACATGCATATTCAGTGAATGGGACACCTTGTTGTCACAGAAAACAACCCTGAGTGAAAAAATAACACCAATAAACTGAAAGGTGCCGACAGAACCAAAACCCCGACGCTCCCGTTCGACCTAATCTGGGATCTAATGGAAGATGCTCCATACATTCATTCTCCTTCTACTTCCTCAAACACTTTTCAAGGTTGATCTATTTCAAACCTTTTTCATTTCCCCTGAAACCTTGTTTTATTATTAAAGCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU111719 lncRNA downstream 14482 91071168 ~ 91071408 (-) True G100435
TU111710 lncRNA downstream 23906 91059315 ~ 91061984 (-) False G100431
TU111711 lncRNA downstream 23906 91061262 ~ 91061984 (-) False G100431
TU111712 lncRNA downstream 23906 91061262 ~ 91061984 (-) True G100431
TU111708 lncRNA downstream 32850 91052704 ~ 91053040 (-) True G100430
TU111688 lncRNA upstream 316 91086856 ~ 91087762 (-) True G100416
TU111730 lncRNA upstream 1265 91087805 ~ 91088104 (-) True G100441
TU111731 lncRNA upstream 2170 91088710 ~ 91089089 (-) True G100442
TU111732 lncRNA upstream 7162 91093702 ~ 91094427 (-) True G100443
TU111741 lncRNA upstream 14054 91100594 ~ 91101188 (-) True G100445
XM_036988630.1 mRNA downstream 13174 90983267 ~ 91072716 (-) False LOC110516041
XM_036988631.1 mRNA downstream 13174 90983267 ~ 91072716 (-) False LOC110516041
XM_036988636.1 mRNA downstream 13174 90983267 ~ 91072716 (-) False LOC110516041
XM_036988637.1 mRNA downstream 13174 90983267 ~ 91072716 (-) False LOC110516041
XM_036988640.1 mRNA downstream 13174 90983267 ~ 91072716 (-) False LOC110516041
XM_036988668.1 mRNA upstream 3871 91090411 ~ 91119121 (-) False LOC110531579
XM_036988670.1 mRNA upstream 4879 91091419 ~ 91119379 (-) False LOC110531579
XM_036988676.1 mRNA upstream 230628 91317168 ~ 91530446 (-) False LOC118966091
XM_036988681.1 mRNA upstream 230628 91317168 ~ 91530446 (-) False LOC118966091
XM_036988689.1 mRNA upstream 230628 91317168 ~ 91530446 (-) False LOC118966091
TU111641 other downstream 100721 90982735 ~ 90985169 (-) True LOC110516041
TU111293 other downstream 229324 90803445 ~ 90856566 (-) False G100197
TU111298 other downstream 229324 90803445 ~ 90856566 (-) False G100197
TU111318 other downstream 229547 90854955 ~ 90856343 (-) True G100197
TU111325 other downstream 303493 90781020 ~ 90782397 (-) False G100197
TU111909 other upstream 146200 91232740 ~ 91233788 (-) True G100582
TU112492 other upstream 706039 91792579 ~ 91797445 (-) True LOC110531398
TU113894 other upstream 1505041 92591581 ~ 92595514 (-) True G102060
TU113918 other upstream 1550758 92637298 ~ 92638881 (-) True G102083
TU113974 other upstream 1652473 92739013 ~ 92739530 (-) True G102119

Expression Profile